Job Description P39099 Confidence 99.88% Date Thu Jan 5 11:58:15 GMT 2012 Rank 27 Aligned Residues 175 % Identity 18% Template c2qt5A_ PDB info PDB header:peptide binding protein Chain: A: PDB Molecule:glutamate receptor-interacting protein 1; PDBTitle: crystal structure of grip1 pdz12 in complex with the fras12 peptide Resolution 2.30 Å

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		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		E	I	K	R	G	L	L	G	I	K	G	T	E	M	S	A	D	I	A	K	A	F	N	L	D	V	Q	R	G	A	F	V	S	E	V	L	P	G	S	G	S	A	K	A	G	.	V	K	A	G	D	I	I	T	S	L	N	G	K	P	L	N	S	F	A	E	L	R	S	R	I	A	T	T	E	P	G	T	K	V
Query Conservation																																															.
Alig confidence															.	.	.	.	.	.	.	.	.																								.
Template Conservation															.	.	.	.	.	.	.	.	.
Template Sequence		K	K	E	G	T	T	L	G	L	T	V	S	G	.	.	.	.	.	.	.	.	.	G	I	D	K	D	G	K	P	R	V	S	N	L	R	Q	G	G	I	A	A	R	S	D	Q	L	D	V	G	D	Y	I	K	A	V	N	G	I	N	L	A	K	F	R	H	D	E	I	I	S	L	L	K	N	V	G	E	R	V
Template Known Secondary structure				T	T										.	.	.	.	.	.	.	.	.		T	T	S	S	S		S							T	T	S					T	T	S			T	T							T	T				T	T	S											T			S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70										.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390		.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.		.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.																		.
Query SS confidence																																																			.																		.
Query Sequence		K	L	G	L	L	R	N	G	K	P	L	E	V	E	V	T	L	D	T	S	T	S	S	S	A	S	A	E	M	I	T	P	A	L	E	G	A	T	L	S	D	G	Q	L	K	D	G	G	K	.	G	I	K	I	D	E	V	V	K	G	S	P	A	A	Q	A	G	.	L	Q	K	D	D	V	I	I	G	V	N	R
Query Conservation																																																			.																		.
Alig confidence																																																			.																		.
Template Conservation
Template Sequence		V	L	E	V	E	Y	E	L	P	P	V	S	I	Q	G	S	S	V	M	F	R	T	V	E	V	T	L	H	K	E	G	N	T	F	G	F	V	I	R	G	G	A	H	D	D	R	N	K	S	R	P	V	V	I	T	C	V	R	P	G	G	P	A	D	R	E	G	T	I	K	P	G	D	R	L	L	S	V	D	G
Template Known Secondary structure																	S	S													B	T	T	B		S									S	S	T	T	T											T	T	S										T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		420	.	.	.			.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
Predicted Secondary structure						.	.
Query SS confidence						.	.
Query Sequence		D	R	V	N	.	.	S	I	A	E	M	R	K	V	L	A	A	K	P	A	I	I	A	L	Q	I	V	R	G
Query Conservation						.	.
Alig confidence						.	.
Template Conservation
Template Sequence		I	R	L	L	G	T	T	H	A	E	A	M	S	I	L	K	Q	C	G	Q	E	A	T	L	L	I	E	Y	D
Template Known Secondary structure					T	T												T	T		S
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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