Job Description P39099 Confidence 98.44% Date Thu Jan 5 11:58:15 GMT 2012 Rank 247 Aligned Residues 174 % Identity 18% Template c2ok5A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:complement factor b; PDBTitle: human complement factor b Resolution 2.30 Å

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.				.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.																	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.													.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Query SS confidence																							.	.	.													.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Query Sequence		L	G	S	G	V	I	I	N	A	S	K	G	Y	V	L	T	N	N	H	V	I	.	.	.	N	Q	A	Q	K	I	S	I	Q	L	N	D	.	G	R	E	F	D	A	K	L	I	G	S	D	D	Q	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	A	L	L	Q	I	Q	N	P	.	.
Query Conservation																							.	.	.													.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Alig confidence												.	.										.	.	.													.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.
Template Conservation												.	.
Template Sequence		S	C	M	G	A	V	V	S	E	Y	.	.	F	V	L	T	A	A	H	C	F	T	V	D	D	K	E	H	S	I	K	V	S	V	G	G	E	K	R	D	L	E	I	E	V	V	L	F	H	P	N	Y	N	I	N	G	K	K	E	A	G	I	P	E	F	Y	D	Y	D	V	A	L	I	K	L	K	N	K	L	K
Template Known Secondary structure									S	S	S	.	.						G	G	G			T	T			G	G	G						T	T		S			B									T	T			T	T	T	T	T	T	T	T		S				T	T								S	S
Template Predicted Secondary structure												.	.
Template SS confidence
		485	.	.	.	.	490	.	.	.	.			.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
				149	150	.	.	.	.	.	.	.	.	.	160	.	.																					.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	S	K	L	T	Q	I	A	I	A	D	S	D	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	V	G	D	F	A	V	A	V	G	N	P	F	G	L	G	Q	T	A	T	S	G	I	V	S	A	L	G	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	G	Q	T	I	R	P	I	C	L	P	C	T	E	G	T	T	R	A	L	R	L	P	P	T	T	T	C	Q	Q	Q	K	E	E	L	L	P	A	Q	D	I	K	A	L	F	V	S	E	E	E	K	K	L	T	R	K	E	V	Y	I	K	N	G	D	K	K	G	S	C	E	R	D	A	Q	Y	A	P	G	Y	D
Template Known Secondary structure			B	T	T	B				B		S	S	B							T	T			T	T											S		S	S											T	T												S	T	T							G	G	G	G	S	T	T		T
Template Predicted Secondary structure
Template SS confidence
		563	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.
				192	.	.	.	.	.	.	.	200	.	.	.	.	.								.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.				.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240										.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure		.	.															.	.	.	.	.	.	.																				.	.	.																	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.															.	.	.	.	.	.	.																				.	.	.																	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	S	G	L	N	L	E	G	L	E	N	F	I	Q	T	.	.	.	.	.	.	.	D	A	S	I	N	R	G	N	S	G	G	A	L	L	N	L	N	G	E	.	.	.	L	I	G	I	N	T	A	I	L	A	P	G	G	G	S	V	.	.	.	.	.	.	.	.	.	G	I	G	F	A	I	P	S	N	M
Query Conservation		.	.															.	.	.	.	.	.	.																				.	.	.																	.	.	.	.	.	.	.	.	.
Alig confidence		.	.															.	.	.	.	.	.	.																				.	.	.																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	V	K	D	I	S	E	V	V	T	P	R	F	L	C	T	G	G	V	S	P	Y	A	D	P	N	T	C	R	G	D	S	G	G	P	L	I	V	H	K	R	S	R	F	I	Q	V	G	V	I	S	W	G	V	V	D	V	C	K	N	Q	K	R	Q	K	Q	V	P	A	H	A	R	D	F	H	I	N	L	F	Q
Template Known Secondary structure		T		S		G	G	G	T	S		T	T						S	S	S	S	S							G	G	G	T	T								T	T												S				G	G	G	T	T	T						T	T								G	G	G
Template Predicted Secondary structure
Template SS confidence
		643	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	T	L	A	Q	Q	L	I	D	F	G	E	I	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	P	W	L	K	E	K	L	Q	D	E	D	L	G	F
Template Known Secondary structure		S								T	T	T	S				B
Template Predicted Secondary structure
Template SS confidence
		723	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions