Job Description P39099 Confidence 99.64% Date Thu Jan 5 11:58:15 GMT 2012 Rank 46 Aligned Residues 98 % Identity 21% Template c2joaA_ PDB info PDB header:protein binding Chain: A: PDB Molecule:serine protease htra1; PDBTitle: htra1 bound to an optimized peptide: nmr assignment of pdz2 domain and ligand resonances Resolution UNK

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		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.							290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.
Query Sequence		G	E	I	K	R	G	L	L	G	I	K	G	T	E	M	S	A	D	I	A	K	A	F	N	L	D	V	Q	.	.	.	.	.	.	R	G	A	F	V	S	E	V	L	P	G	S	G	S	A	K	A	G	V	K	A	G	D	I	I	T	S	L	N	G	K	P	L	N	S	F	A	E	L	R	S	R	I	A	T	T
Query Conservation																														.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.																																														.
Template Conservation																																																																																	.
Template Sequence		G	S	H	M	K	K	Y	I	G	I	R	M	M	S	L	T	S	S	K	A	K	E	L	K	D	R	H	R	D	F	P	D	V	I	S	G	A	Y	I	I	E	V	I	P	D	T	P	A	E	A	G	G	L	K	E	N	D	V	I	I	S	I	N	G	Q	S	V	V	S	A	N	D	V	S	D	V	I	K	R	.
Template Known Secondary structure				S				B		S																			T	T	S		S				S								S	S	S						T			T	T					B		S	S		B			S											.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	P	G	T	K	V	K	L	G	L	L	R	N	G	K	P	L	E	V	E	V	T	L	D	T	S	T
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	E	S	T	L	N	M	V	V	R	R	G	N	E	D	I	M	I	T	V	I	P	E	E	I	D
Template Known Secondary structure		.	.		S	S								T	T										B
Template Predicted Secondary structure		.	.
Template SS confidence
				455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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