Job Description P39099 Confidence 98.56% Date Thu Jan 5 11:58:15 GMT 2012 Rank 243 Aligned Residues 170 % Identity 18% Template c2ijd1_ PDB info PDB header:hydrolase, transferase Chain: 1: PDB Molecule:picornain 3c, rna-directed rna polymerase; PDBTitle: crystal structure of the poliovirus precursor protein 3cd Resolution 3.40 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	S	L	A	P	M	L	E	K	V	L	P	A	V	V	S	V	R	V	E	G	T	A	S	Q	G	Q	K	I	P	E	E	F	K	K	F	F	G	D	D	L	P	D	Q	P	A	Q	P	F	E	G	L	G	S	G	V	I	I	N	A	S	K	G	Y	V	L	T	N	N	H	V	I	N	Q	A	Q	K	I	S	I
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.										.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.										.
Template Sequence		P	G	F	D	Y	A	V	A	M	A	K	R	N	I	V	T	A	T	T	S	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	F	T	M	L	G	V	H	D	N	.	.	V	A	I	L	P	T	H	A	S	.	P	G	E	S	I	V	I
Template Known Secondary structure																					T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									B	T	.	.						G	G	G		.			S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.										.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.																														.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																					.	.																		.
Query SS confidence																					.	.																		.
Query Sequence		Q	L	N	D	G	R	E	F	D	A	K	L	I	G	S	D	D	Q	S	.	.	D	I	A	L	L	Q	I	Q	N	P	S	K	L	T	Q	I	A	.	I	A	D	S	D	K	L	R	V	G	D	F	A	V	A	V	G	N	P	F	G	L	G	Q	T	A	T	S	G	I	V	S	A	L	G	R	S	G	L	N	L
Query Conservation																					.	.																		.
Alig confidence																					.	.																		.
Template Conservation
Template Sequence		D	G	K	E	V	A	I	L	A	A	K	A	L	A	D	Q	A	G	T	N	L	E	I	T	I	I	T	L	K	R	N	E	K	F	R	D	I	R	P	H	I	P	T	Q	I	T	E	T	N	D	G	V	L	I	V	N	T	S	K	Y	P	N	M	Y	V	P	V	G	A	V	T	E	Q	G	Y	L	N	L	G	G
Template Known Secondary structure		T	T														T	T	S												S	S			B				G	G	G	S		S	S													S	S	S	S	T	T																	T	T
Template Predicted Secondary structure
Template SS confidence
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	L	E	N	F	I	Q	T	D	A	S	I	N	R	G	N	S	G	G	A	L	L	N	L	N	G	E	L	I	G	I	N	T	A	I	L	A	P	G	G	G	S	V	G	I	G	F	A	I	P	S
Query Conservation
Alig confidence																										.											.	.	.	.	.	.
Template Conservation																										.											.	.	.	.	.	.
Template Sequence		R	Q	T	A	R	T	L	M	Y	N	F	P	T	R	A	G	Q	A	G	G	V	I	T	C	.	T	G	K	V	I	G	M	H	V	G	.	.	.	.	.	.	G	N	G	S	H	G	F	A	A	A	L
Template Known Secondary structure		S										S				T	T		T	T						.	T	T									.	.	.	.	.	.			S	S
Template Predicted Secondary structure																										.											.	.	.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.							.	.	.	.	.	.	170	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions