Job Description P39099 Confidence 99.21% Date Thu Jan 5 11:58:15 GMT 2012 Rank 85 Aligned Residues 85 % Identity 25% Template c2dkrA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:lin-7 homolog b; PDBTitle: solution structure of the pdz domain from human lin-72 homolog b Resolution UNK

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		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.		.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.			.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.																	.	.
Query SS confidence																																																.																	.	.
Query Sequence		T	S	S	S	A	S	A	E	M	I	T	P	A	L	E	G	A	T	L	S	D	G	Q	L	K	D	G	G	K	G	I	K	I	D	E	V	V	K	G	S	P	A	A	Q	A	G	.	L	Q	K	D	D	V	I	I	G	V	N	R	D	R	V	N	.	.	S	I	A	E	M	R	K	V	L	A	A	K	P	A	I
Query Conservation																																																.																	.	.
Alig confidence																																																.																	.	.
Template Conservation
Template Sequence		S	S	G	S	S	G	V	V	E	L	P	K	T	D	E	G	L	G	F	N	I	M	G	G	K	E	Q	N	S	P	I	Y	I	S	R	V	I	P	G	G	V	A	D	R	H	G	G	L	K	R	G	D	Q	L	L	S	V	N	G	V	S	V	E	G	E	Q	H	E	K	A	V	E	L	L	K	A	A	Q	G	S
Template Known Secondary structure			S	S		S									T	T									S	S	S	S	S										T	T	S										T	T		B					T	T				T	T	S														S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		439	440	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	L	Q	I	V	R	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	K	L	V	V	R	S	G
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions