Job Description P39099 Confidence 98.42% Date Thu Jan 5 11:58:15 GMT 2012 Rank 248 Aligned Residues 177 % Identity 19% Template c2b9lA_ PDB info PDB header:immune system/protein binding Chain: A: PDB Molecule:prophenoloxidase activating factor; PDBTitle: crystal structure of prophenoloxidase activating factor-ii from the2 beetle holotrichia diomphalia Resolution 2.00 Å

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.					.	.	.	.	.	.	120	.	.												.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.								.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.										.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.										.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Query Sequence		L	G	S	G	V	I	I	N	A	S	K	G	Y	V	L	T	N	N	H	V	I	N	Q	.	.	.	.	A	Q	K	I	S	I	Q	L	N	.	.	.	.	.	.	.	.	.	.	.	D	G	R	E	F	D	A	K	L	I	G	S	D	D	Q	S	.	.	.	.	.	.	.	D	I	A	L	L	Q	I	Q	N	P
Query Conservation																									.	.	.	.										.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Alig confidence												.	.												.	.	.	.										.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation												.	.
Template Sequence		V	C	G	G	S	L	I	A	P	S	.	.	V	V	L	T	G	A	H	C	V	N	S	Y	Q	S	N	L	D	A	I	K	I	R	A	G	E	W	D	T	L	T	E	K	E	R	L	P	Y	Q	E	R	K	I	R	Q	V	I	I	H	S	N	F	N	P	K	T	V	V	N	D	V	A	L	L	L	L	D	R	P
Template Known Secondary structure										T	T	.	.										G	G	G	T	T		G	G	G						S			B	T	T				S	S	S														T	T			T	T	T		T	T								S	S
Template Predicted Secondary structure												.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
						149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.								.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.												.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure		.	.	.	.																														.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.													.
Query SS confidence		.	.	.	.																														.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.													.
Query Sequence		.	.	.	.	S	K	L	T	Q	I	A	I	A	D	S	D	K	L	R	V	G	D	F	A	V	A	V	G	N	P	F	G	L	.	.	.	.	.	.	.	G	Q	T	A	T	S	G	I	V	S	A	L	G	R	S	G	.	.	.	.	.	.	.	.	.	.	.	L	N	L	E	G	L	E	N	F	I	Q	T	.
Query Conservation		.	.	.	.																														.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.													.
Alig confidence		.	.	.	.																														.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation
Template Sequence		L	V	Q	A	D	N	I	G	T	I	C	L	P	Q	Q	S	Q	I	F	D	S	T	E	C	F	A	S	G	W	G	K	K	E	F	G	S	R	H	R	Y	S	N	I	L	K	K	I	Q	L	P	T	V	D	R	D	K	C	Q	A	D	L	R	N	T	R	L	G	L	K	F	V	L	D	Q	T	F	V	C	A	G
Template Known Secondary structure			B			T	T					B				T	T						S									T	T	T	T	T		T	T	S	S			B																				T	T	T	T		T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
					206	.	.	.	210	.	.	.	.	.	.	.	.	.							220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.															.	.	.	.	.	.
Query SS confidence		.	.	.															.	.	.	.	.	.
Query Sequence		.	.	.	D	A	S	I	N	R	G	N	S	G	G	A	L	L	.	.	.	.	.	.	N	L	N	G	E	L	I	G	I	N	T	A	I	L	A	P	G	G	G	S	V	G	I	G	F	A	I	P	S	N	M	A	R	T	L	A	Q	Q	L	I	D	F	G	E	I	K	R	G	L	L
Query Conservation		.	.	.															.	.	.	.	.	.
Alig confidence		.	.	.															.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	Q	G	K	D	T	C	T	G	D	G	G	S	P	L	F	C	P	D	P	R	N	P	S	R	Y	M	Q	M	G	I	V	A	W	G	I	G	C	G	D	E	N	V	P	G	V	Y	A	N	V	A	H	F	R	N	W	I	D	Q	E	M	Q	A	K	G	L	S	T	T	P	Y	V
Template Known Secondary structure			B	S	S		S			S	S		T	T								T	T												S		T	T				B	S	S	S							G	G	G	G											T	T			S	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions