Job Description P39099 Confidence 65.07% Date Thu Jan 5 11:58:15 GMT 2012 Rank 411 Aligned Residues 139 % Identity 14% Template c1wqsA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:3c-like protease; PDBTitle: crystal structure of norovirus 3c-like protease Resolution 2.80 Å

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		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.
Query SS confidence																								.
Query Sequence		G	L	G	S	G	V	I	I	N	A	S	K	G	Y	V	L	T	N	N	H	V	I	.	N	Q	A	Q	K	I	S	I	Q	L	N	D	G	R	E	F	D	A	K	L	I	G	S	D	D	Q	S	D	I	A	L	L	Q	I	Q	N	P	S	K	L	T	Q	I	A	I	A	D	S	D	K	L	R	V	G	D	F	A
Query Conservation																								.
Alig confidence													.	.										.							.	.	.	.	.	.	.
Template Conservation													.	.																	.	.	.	.	.	.	.
Template Sequence		G	S	G	W	G	F	W	V	S	P	T	.	.	V	F	I	T	T	T	H	V	I	P	T	G	V	R	E	F	.	.	.	.	.	.	.	F	G	E	P	I	E	S	I	A	I	H	R	A	G	E	F	T	Q	F	R	F	S	R	K	V	R	P	D	L	T	G	M	V	L	E	E	G	C	P	E	G	V	V	C
Template Known Secondary structure		S	S	S					S	S	S	S	.	.						G	G	G	S		S	S		S	B	S	.	.	.	.	.	.	.	S	S	S	B	G	G	G	S						T	T							S	S		S		T	T								S	S			T	T
Template Predicted Secondary structure													.	.																	.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.								40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		169	170	.	.	.	.	.	.	.	.				.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.								210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure												.	.	.																																.	.	.	.	.	.	.											.	.	.
Query SS confidence												.	.	.																																.	.	.	.	.	.	.											.	.	.
Query Sequence		V	A	V	G	N	P	F	G	L	G	.	.	.	Q	T	A	T	S	G	I	V	S	A	L	G	R	S	G	L	N	L	E	G	L	E	N	F	I	Q	T	D	A	S	I	.	.	.	.	.	.	.	N	R	G	N	S	G	G	A	L	L	.	.	.	N	L	N	G	E	L	I	G	I	N	T	A	I	L	A	P
Query Conservation												.	.	.																																.	.	.	.	.	.	.											.	.	.
Alig confidence												.	.	.																																.	.	.	.	.	.	.											.	.	.
Template Conservation
Template Sequence		S	I	L	I	K	R	D	S	G	E	L	L	P	L	A	V	R	M	G	A	I	A	S	M	K	I	Q	G	R	L	V	H	G	Q	S	G	M	L	L	T	G	A	N	A	K	G	M	D	L	G	T	L	P	G	D	C	G	A	P	Y	V	Y	K	R	N	N	D	W	V	V	C	G	V	H	A	A	A	T	K	S
Template Known Secondary structure								S	S	S																	G	G	G	S										S	S	S	S			S	S	S		S	S			T	T		T	T								S	S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		236	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	N
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		164	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions