Job Description P39099 Confidence 99.80% Date Thu Jan 5 11:58:15 GMT 2012 Rank 36 Aligned Residues 149 % Identity 19% Template c1u3bA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:amyloid beta a4 precursor protein-binding, PDBTitle: auto-inhibition mechanism of x11s/mints family scaffold2 proteins revealed by the closed conformation of the tandem3 pdz domains Resolution UNK

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		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.			.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																							.																	.	.
Query SS confidence																							.																	.	.
Query Sequence		D	V	Q	R	G	A	F	V	S	E	V	L	P	G	S	G	S	A	K	A	G	.	V	K	A	G	D	I	I	T	S	L	N	G	K	P	L	N	.	.	S	F	A	E	L	R	S	R	I	A	T	T	E	P	G	T	K	V	K	L	G	L	L	R	N	G	K	P	L	E	V	E	V	T	L	D	T	S	T	S
Query Conservation																							.																	.	.
Alig confidence																							.																	.	.
Template Conservation
Template Sequence		S	I	L	P	T	V	I	I	A	N	M	M	H	G	G	P	A	E	K	S	G	K	L	N	I	G	D	Q	I	M	S	I	N	G	T	S	L	V	G	L	P	L	S	T	C	Q	S	I	I	K	G	L	K	N	Q	S	R	V	K	L	N	I	V	R	C	P	P	V	T	T	V	L	I	R	R	P	D	L	R	Y
Template Known Secondary structure			S	S		S								S	S	S						S	S			T	T							T	T				T	T	S												T	T	S		S																				S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.			.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
Predicted Secondary structure																																																														.	.
Query SS confidence																																																														.	.
Query Sequence		S	S	A	S	A	E	M	I	T	P	A	L	E	G	A	T	L	S	D	G	Q	L	K	D	G	G	K	G	I	K	I	D	E	V	V	K	G	S	P	A	A	Q	A	G	L	Q	K	D	D	V	I	I	G	V	N	R	D	R	V	N	.	.	S	I	A	E	M	R	K	V	L	A	A	K	P	A	I	I	A	L
Query Conservation																																																														.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	L	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	Q	N	G	I	I	C	S	L	M	R	G	G	I	A	E	R	G	G	V	R	V	G	H	R	I	I	E	I	N	G	Q	S	V	V	A	T	P	H	E	K	I	V	H	I	L	S	N	A	V	G	E	I	H	M
Template Known Secondary structure				S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T							T	T	S						T			T	T							T	T				T	T	S											T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		122	.	.	.																					.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		442	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	V	R	G	N	E	S	I	Y	L	L	M	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	M	P	A	A	M	Y	R	L	L	T	A	Q
Template Known Secondary structure							S					S
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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