Job Description P39099 Confidence 99.63% Date Thu Jan 5 11:58:15 GMT 2012 Rank 51 Aligned Residues 172 % Identity 22% Template c1qy6A_ PDB info PDB header:protease Chain: A: PDB Molecule:serine protease; PDBTitle: structue of v8 protease from staphylococcus aureus Resolution 1.90 Å

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		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.					.	.	.	.	.	120	.	.
Predicted Secondary structure																																																																		.	.	.	.									.	.	.	.
Query SS confidence																																																																		.	.	.	.									.	.	.	.
Query Sequence		P	A	V	V	S	V	R	V	E	G	T	A	S	Q	G	Q	K	I	P	E	E	F	K	K	F	F	G	D	D	L	P	D	Q	P	A	Q	P	F	E	G	L	G	S	G	V	I	I	N	A	S	K	G	Y	V	L	T	N	N	H	V	I	N	Q	A	.	.	.	.	Q	K	I	S	I	Q	L	N	.	.	.	.
Query Conservation																																																																		.	.	.	.									.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.													.	.	.	.									.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Sequence		A	P	V	T	Y	I	Q	V	E	A	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	G	T	F	I	A	S	G	V	V	V	G	K	D	.	.	T	L	L	T	N	K	H	V	V	D	A	T	H	G	D	P	H	A	L	K	A	F	P	S	A	I	N	Q
Template Known Secondary structure		T	T									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T											S	S	S	.	.											T	T	T	T		G	G	G						T			B	T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30																										.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
						123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150								.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure		.	.	.	.																													.	.	.	.	.	.	.
Query SS confidence		.	.	.	.																													.	.	.	.	.	.	.
Query Sequence		.	.	.	.	D	G	R	E	F	D	A	K	L	I	G	S	D	D	Q	S	D	I	A	L	L	Q	I	Q	N	P	S	K	.	.	.	.	.	.	.	L	T	Q	I	A	I	A	D	S	D	K	L	R	V	G	D	F	A	V	A	V	G	N	P	F	G	L	G	Q	T	A	T	S	G	I	V	S	A	L	G	R
Query Conservation		.	.	.	.																													.	.	.	.	.	.	.
Alig confidence		.	.	.	.																													.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	N	Y	P	N	G	G	F	T	A	E	Q	I	T	K	Y	S	G	E	G	D	L	A	I	V	K	F	S	P	N	E	Q	N	K	H	I	G	E	V	V	K	P	A	T	M	S	N	N	A	E	T	Q	T	N	Q	N	I	T	V	T	G	Y	P	G	D	K	P	V	A	T	M	W	E	S	K	G	K	I	T	Y
Template Known Secondary structure		T	B		T	T												S	S	S	S											T	T	S							S					B				S	S			T	T										T	T	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		S	G	L	N	L	E	G	L	E	N	F	I	Q	T	D	A	S	I	N	R	G	N	S	G	G	A	L	L	N	L	N	G	E	L	I	G	I	N	T	A	I	L	A	P	G	G	G	S	V	G	I	G	F	A	I	P	S	.	N	M	A	R	T	L	A	Q	Q	L	I	D
Query Conservation																																																											.
Alig confidence							.	.	.	.	.	.																																			.	.	.	.	.								.
Template Conservation							.	.	.	.	.	.																																			.	.	.	.	.
Template Sequence		L	K	G	E	A	.	.	.	.	.	.	M	Q	Y	D	L	S	T	T	G	G	N	S	G	S	P	V	F	N	E	K	N	E	V	I	G	I	H	W	G	G	V	P	N	E	.	.	.	.	.	F	N	G	A	V	F	I	N	E	N	V	R	N	F	L	K	Q	N	I	E
Template Known Secondary structure				T	T		.	.	.	.	.	.									T	T		T	T						T	T	S											T	T	T	.	.	.	.	.																				T
Template Predicted Secondary structure							.	.	.	.	.	.																																			.	.	.	.	.
Template SS confidence
		153	.	.	.	.							.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.						.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions