Job Description P39099 Confidence 100.00% Date Thu Jan 5 11:58:15 GMT 2012 Rank 9 Aligned Residues 290 % Identity 34% Template c1lcyA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:htra2 serine protease; PDBTitle: crystal structure of the mitochondrial serine protease htra2 Resolution 2.00 Å

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		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure
Query SS confidence
Query Sequence		G	Q	V	A	D	Q	A	P	L	P	S	L	A	P	M	L	E	K	V	L	P	A	V	V	S	V	R	V	E	G	T	A	S	Q	G	Q	K	I	P	E	E	F	K	K	F	F	G	D	D	L	P	D	Q	P	A	Q	P	F	E	G	L	G	S	G	V	I	I	N	A	S	K	G	Y	V	L	T	N	N	H	V
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template Sequence		P	P	A	S	P	R	S	Q	Y	N	F	I	A	D	V	V	E	K	T	A	P	A	V	V	Y	I	E	I	L	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	F	L	G	R	E	V	P	I	S	N	G	S	G	F	V	V	A	A	.	D	G	L	I	V	T	N	A	H	V
Template Known Secondary structure										S											G	G	G										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	T															T	.	T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.																			.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	Q	A	Q	K	I	S	I	Q	L	N	D	G	R	E	F	D	A	K	L	I	G	S	D	D	Q	S	D	I	A	L	L	Q	I	Q	N	P	S	K	L	T	Q	I	A	I	A	D	S	D	K	L	R	V	G	D	F	A	V	A	V	G	N	P	F	G	L	G	Q	T	A	T	S	G	I	V	S	A	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	D	R	R	R	V	R	V	R	L	L	S	G	D	T	Y	E	A	V	V	T	A	V	D	P	V	A	D	I	A	T	L	R	I	Q	T	K	E	P	L	P	T	L	P	L	G	R	S	A	D	V	R	Q	G	E	F	V	V	A	M	G	S	P	F	A	L	Q	N	T	I	T	S	G	I	V	S	S	A	Q
Template Known Secondary structure			T	T		S							T	T	S												T	T	T	T									S	S							B			G	G	G			T	T									T	T	S	S	S	S							B		S		S
Template Predicted Secondary structure
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	G	L	N	L	E	G	L	E	N	F	I	Q	T	D	A	S	I	N	R	G	N	S	G	G	A	L	L	N	L	N	G	E	L	I	G	I	N	T	A	I	L	A	P	G	G	G	S	V	G	I	G	F	A	I	P	S	N	M	A	R	T	L	A	Q	Q	L	I	D	F	G	E	I	K	R	G	L	L	G
Query Conservation
Alig confidence			.	.	.	.	.	.																																								.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.																																								.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Sequence		R	.	.	.	.	.	.	P	N	V	E	Y	I	Q	T	D	A	A	I	D	F	G	N	A	G	G	P	L	V	N	L	D	G	E	V	I	G	V	N	T	M	K	V	T	A	G	.	.	.	.	.	I	S	F	A	I	P	S	D	R	L	R	E	F	L	.	.	.	.	.	.	.	.	.	H	R	R	Y	I	G
Template Known Secondary structure			.	.	.	.	.	.									S	S			S	T	T	T	T	T	S					T	T	S												T	T	.	.	.	.	.														T	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.																																								.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template SS confidence
		147							.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.						.	.	.	190	.	.	.	.	.	.	.	.	.	200										.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.							.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.
Query Sequence		I	K	G	T	E	M	S	A	D	I	A	K	A	F	N	L	.	.	.	.	.	.	D	V	Q	R	G	A	F	V	S	E	V	L	P	G	S	G	S	A	K	A	G	V	K	A	G	D	I	I	T	S	L	N	G	K	P	L	N	S	F	A	E	L	R	S	R	I	A	T	T	E	P	G	T	K	V	K	L	G
Query Conservation																		.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.																																															.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		V	M	M	L	T	L	S	P	S	I	L	A	E	L	Q	L	R	E	P	S	F	P	D	V	Q	H	G	V	L	I	H	K	V	I	L	G	S	P	A	H	R	A	G	L	R	P	G	D	V	I	L	A	I	G	E	Q	M	V	Q	N	A	E	D	V	Y	E	A	V	.	.	.	R	T	Q	S	Q	L	A	V	Q
Template Known Secondary structure																T	T	S		T	T	S				S	S									T	T	S						T			T	T							T	T					S									.	.	.	T	T		S	S
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.				.	300	.	.	.	.	.	.	.
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	R	N	G	K	P	L	E	V	E	V	T	L	D	T	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	R	G	R	E	T	L	T	L	Y	V	T	P	E	V	T	E
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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