 |
Job Description | P39099 | Confidence | 82.80% | Date | Thu Jan 5 11:58:15 GMT 2012 |
Rank | 375 | Aligned Residues | 28 |
% Identity | 11% | Template | c1b34B_ |
PDB info |
PDB header:rna binding protein | Chain: B: PDB Molecule:protein (small nuclear ribonucleoprotein sm d2); |
PDBTitle: crystal structure of the d1d2 sub-complex from the human snrnp core2 domain
|
Resolution | 2.50 Å |
|
  |   |
115 | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | K | I | S | I | Q | L | N | D | G | R | E | F | D | A | K | L | I | G | S | D | D | Q | S | D | I | A | L |
Query Conservation |   |
  |   |
|   |
|   |   |   |
|
|   |   |   |   |
|   |
|   |   |   |
|   |   |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |
|   |
|
|   |
|   |   |   |   |
|   |
|   |   |
|
|   |   |
|
|
|
|
|
Template Sequence |   |
T | Q | V | L | I | N | C | R | N | N | K | K | L | L | G | R | V | K | A | F | D | R | H | C | N | M | V | L |
Template Known Secondary structure |   |
|  |  |  |  |  |  | T | T | S |
|  |  |  |  |  |  |  |  |  |
| T | T |
|
|  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|