Job Description Q46927 Confidence 100.00% Date Thu Jan 5 12:35:56 GMT 2012 Rank 8 Aligned Residues 197 % Identity 23% Template c2nvuB_ PDB info PDB header:protein turnover, ligase Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex Resolution 2.80 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	A	L	Q	L	F	A	D	A	H	I	C	V	V	G	I	G	G	V	G	S	W	A	A	E	A	L	A	R	T	G	I	G	A	I	T	L	I	D	M	D	D	V	C	V	T	N	T	N	R	Q	I	H	A	L	R	D	N	V	G	L	A	K	A	E	V	M	A	E	R	I	R	Q	I	N	P	E	C	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	S	L	Q	F	L	L	D	T	C	K	V	L	V	I	G	A	G	G	L	G	C	E	L	L	K	N	L	A	L	S	G	F	R	Q	I	H	V	I	D	M	D	T	I	D	V	S	N	L	N	R	Q	F	L	F	R	P	K	D	I	G	R	P	K	A	E	V	A	A	E	F	L	N	D	R	V	P	N	C	N
Template Known Secondary structure										T									S	S											T	T	T											B			G	G	G	G	G	T		T	T			G	G	G	T	T	S	B													S	T	T
Template Predicted Secondary structure
Template SS confidence
		2040	.	.	.	.	.	.	.	.	.	2050	.	.	.	.	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.	.	.	.	.	.	.	.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.													.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	V	V	D	D	F	V	T	P	D	N	V	A	Q	Y	M	S	V	G	Y	S	Y	V	I	D	A	I	D	S	V	R	P	K	A	A	L	I	A	Y	C	R	.	.	.	.	.	.	.	.	.	.	.	.	R	N	K	I	P	L	V	T	T	G	G	A	G	G	Q	I	D	P	T	Q	I	Q	V	T	D	L
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.																											.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.
Template Conservation																.	.																																																												.	.	.	.	.
Template Sequence		V	V	P	H	F	N	K	I	Q	D	F	N	D	T	.	.	F	Y	R	Q	F	H	I	I	V	C	G	L	D	S	I	I	A	R	R	W	I	N	G	M	L	I	S	L	L	N	Y	E	D	G	V	L	D	P	S	S	I	V	P	L	I	D	G	G	T	E	G	F	K	G	N	A	R	V	I	.	.	.	.	.
Template Known Secondary structure							S		G	G	G	S				.	.				T		S							S															T					T	T				G	G	G											T	T								.	.	.	.	.
Template Predicted Secondary structure																.	.																																																												.	.	.	.	.
Template SS confidence
		2120	.	.	.	.	.	.	.	.	.	2130	.	.	.			.	.	.	.	.	.	2140	.	.	.	.	.	.	.	.	.	2150	.	.	.	.	.	.	.	.	.	2160	.	.	.	.	.	.	.	.	.	2170	.	.	.	.	.	.	.	.	.	2180	.	.	.	.	.	.	.	.	.	2190	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	K	T	I	Q	D	P	L	A	A	K	L	R	E	R	L	K	S	D	F	G	V	V	K	N	S	K	G	K	L	G	V	D	C	V	F	S	T	E	A	L	V	Y	P	Q	S	D	G	T	V	C	A	M	K	A	T	A	E	G	P	K	R	M	D	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	P	G	M	T	A	C	I	E	C	T	L	E	L	Y	P	P	Q	V	N	F	P	M	C	T	I	A	S	M	P	R	L	P	E	H	C	I	E	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	T	S			T	T	T	S	G	G	G	S																	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																											2193	.	.	.	.	.	.	2200	.	.	.	.	.	.	.	.	.	2210	.	.	.	.	.	.	.	.	.	2220	.	.	.	.	.	.	.	.	.	2230	.
																																																								235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	S	G	F	G	A	A	T	M	V	T	A	T	F	G	F	V	A	V	S	H	A	L	K	K	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	R	M	L	Q	W	P	K	E	Q	P	F	G	E	G	V	P	L	D	G	D	D	P	E	H	I	Q	W	I	F	Q	K	S	L	E	R	A	S	Q	Y	N	I	R	G	V	T	Y	R	L	T	Q	G	V	V	K	R	I	I	P	A	V	A	S	T	N	A	V	I	A	A	V	C	A	T	E	V	F	K	I	A
Template Known Secondary structure					T							T	T	S	T	T					T	T																			T	T															T
Template Predicted Secondary structure
Template SS confidence
		2232	.	.	.	.	.	.	.	2240	.	.	.	.	.	.	.	.	.	2250	.	.	.	.	.	.	.	.	.	2260	.	.	.	.	.	.	.	.	.	2270	.	.	.	.	.	.	.	.	.	2280	.	.	.	.	.	.	.	.	.	2290	.	.	.	.	.	.	.	.	.	2300	.	.	.	.	.	.	.	.	.	2310	.
		261	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	K	A	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	S	A	Y	I	P
Template Known Secondary structure				S	S
Template Predicted Secondary structure
Template SS confidence
		2312	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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