Return to main results Retrieve Phyre Job Id

Job DescriptionP45956
Confidence6.65%DateThu Jan 5 12:03:53 GMT 2012
Rank66Aligned Residues45
% Identity7%Templatec3p6yD_
PDB info PDB header:rna binding protein/rnaChain: D: PDB Molecule:cleavage and polyadenylation specificity factor subunit 6; PDBTitle: cf im25-cf im68-uguaa complex
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.........70....
Predicted Secondary structure 

















Query SS confidence 












































Query Sequence  VYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTETGFEFQTFG
Query Conservation 



  
  

  

  
      
 
 

 
  



  


 
Alig confidence 












































Template Conservation 
 
 


   
   
   
   
                   
 
Template Sequence  LYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFA
Template Known Secondary structure  S

TT

T






TTT

Template Predicted Secondary structure 




















Template SS confidence 












































   83......90.........100.........110.........120.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions