Job Description P45956 Confidence 6.13% Date Thu Jan 5 12:03:53 GMT 2012 Rank 73 Aligned Residues 48 % Identity 21% Template c2zamA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form Resolution 3.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	M	L	V	V	V	T	E	N	V	P	P	R	L	R	G	R	L	A	I	W	L	L	E	V	R	A	G	V	Y	V	G	D	V	S	A	K	I	R	E	M	I	W	E	Q	I	A	G	L	A	E
Query Conservation
Alig confidence																											.	.	.
Template Conservation																											.	.	.
Template Sequence		G	I	L	V	L	G	A	T	N	I	P	W	V	L	D	S	A	I	R	R	R	F	E	K	R	.	.	.	I	Y	I	P	L	P	E	A	H	A	R	A	A	M	F	R	L	H	L	G	S	T	Q
Template Known Secondary structure		T								S			T	T	S									S			.	.	.								S												T	T
Template Predicted Secondary structure																											.	.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.				.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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