Job Description P0AFW0 Confidence 99.93% Date Thu Jan 5 11:27:24 GMT 2012 Rank 4 Aligned Residues 141 % Identity 21% Template c3p8bB_ PDB info PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	Y	L	L	Y	C	K	R	G	Q	L	Q	R	A	Q	E	H	L	E	R	Q	A	V	N	C	L	A	P	M	I	T	L	E	K	I	V	R	G	K	R	T	A	V	S	E	P	L	F	P	N	Y	L	F	V	E	F	D	P	E	V	I	H	T	T	T	I	N	A	T	R	G	V	S	H	F	V	R	F	G
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.	.	.																																						.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.	.																																						.	.	.	.
Template Sequence		K	I	F	A	V	R	V	T	H	G	Q	E	E	T	T	A	K	L	I	Y	S	K	V	R	T	Y	N	L	P	.	.	.	.	.	.	.	.	.	.	I	Y	A	I	L	A	P	S	R	V	K	G	Y	I	F	V	E	A	P	N	K	G	V	V	D	E	A	I	R	G	I	R	H	A	R	G	V	.	.	.	.
Template Known Secondary structure										T	T																	T			.	.	.	.	.	.	.	.	.	.								T	T			S							S	S									T	T		T	T					.	.	.	.
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.																																						.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.											.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		A	S	P	A	I	V	P	S	A	V	I	H	Q	L	S	V	Y	K	P	K	D	I	V	D	P	A	T	P	Y	P	G	D	K	V	I	I	T	E	G	A	F	E	G	F	Q	A	I	F	T	E	P	D	G	E	A	.	R	S	M	L	L	L	N	L	I	N	K	E	I	K	H	S	V	K	N	T	E	F	R	K
Query Conservation																																																									.
Alig confidence		.																					.	.	.	.																															.
Template Conservation		.																					.	.	.	.
Template Sequence		.	L	P	G	E	V	P	F	K	E	I	E	H	F	L	E	E	K	P	A	V	.	.	.	.	S	G	L	E	P	G	D	L	V	E	V	I	A	G	P	F	K	G	Q	K	A	K	V	V	K	I	D	E	S	K	D	E	V	V	V	Q	F	I	D	A	I	V	P	I	P	V	T	I	K	G	D	Y	V	R	L
Template Known Secondary structure		.		S	S		B		G	G	G	T	G	G	G				S		T	T	.	.	.	.	T	T			T	T							S	S	T	T	T	T										T	T	T	T							S	S		S	S								G	G	G
Template Predicted Secondary structure		.																					.	.	.	.
Template SS confidence
			70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.					90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
		162
Predicted Secondary structure
Query SS confidence
Query Sequence		L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		145

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions