Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFW0
Confidence22.52%DateThu Jan 5 11:27:24 GMT 2012
Rank48Aligned Residues57
% Identity16%Templatec3iz6D_
PDB info PDB header:ribosomeChain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
Resolution5.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   99100.........110.........120.........130... ......140.........150.....
Predicted Secondary structure 





















...








Query SS confidence 


































. . .





















Query Sequence  YKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEP. . . DGEARSMLLLNLINKEIKHSVK
Query Conservation                
  
 
  


 
  
 
   ...    
  
 
   
    
 
 
Alig confidence 


































...





















Template Conservation 
   

     
  
    

 
   
 

 
  
     
   
   
  
  
 
   
Template Sequence  LETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLG
Template Known Secondary structure  SSS



STT

SSSS
S


SSS




SS

GG
Template Predicted Secondary structure 





















Template SS confidence 



























































   164.....170.........180.........190.........200.........210.........220...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions