Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFW0
Confidence95.94%DateThu Jan 5 11:27:24 GMT 2012
Rank16Aligned Residues75
% Identity23%Templatec3h7hB_
PDB info PDB header:transcriptionChain: B: PDB Molecule:transcription elongation factor spt5; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273)
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20... ......30.........40.........50.........60.........70..
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Query Sequence  YLLYCKRGQLQRAQEHLER. . . . . . . . . . . . QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINAT
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Template Sequence  WTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEH. . . . . . . . . . . . . . . . . VKGYIYVEAYKQT. . . HVKQAI
Template Known Secondary structure 

TT
TTSSS






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   180.........190.........200.........210.........220 .........230... ......
 
   73......80.........90.........
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Query Sequence  RGVSHFVRFGASPAIVPSAVIHQLSVY
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Template Sequence  EGVGNLRLGYWNQQMVPIKEMTDVLKV
Template Known Secondary structure  TT
GGGGGGSS



GGGTTGGG

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   240.........250.........260......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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