Job Description P0AFW0 Confidence 97.21% Date Thu Jan 5 11:27:24 GMT 2012 Rank 12 Aligned Residues 77 % Identity 17% Template c3ewgA_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative transcription antitermination protein nusg; PDBTitle: crystal structure of the n-terminal domain of nusg (ngn) from2 methanocaldococcus jannaschii Resolution 2.04 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	L	Y	C	K	R	G	Q	L	Q	R	A	Q	E	H	L	E	R	Q	A	V	N	C	L	A	P	M	I	T	L	E	K	I	V	R	G	K	R	T	A	V	S	E	P	L	F	P	N	Y	L	F	V	E	F	D	P	E	V	I	H	T	T	T	I	N	A	T	R	G	V	S	H	F	V	R	F	G	A	S
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.																																																.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.																																																.	.	.
Template Sequence		F	A	V	R	T	M	V	G	Q	E	K	N	I	A	G	L	M	A	S	R	.	.	.	.	.	.	.	.	.	.	A	E	K	E	Q	L	D	V	Y	S	I	L	A	S	E	S	L	K	G	Y	V	L	V	E	A	E	T	K	G	D	V	E	E	L	I	K	G	M	P	R	V	R	G	I	V	P	G	.	.	.
Template Known Secondary structure								T	T													.	.	.	.	.	.	.	.	.	.				T	T										T	T	S	T	T							S										T	T		T	T						S	S	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.																																																.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.											.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	I	V	P	S	A	V	I	H	Q	L
Query Conservation
Alig confidence		.	.
Template Conservation		.	.
Template Sequence		.	.	T	I	A	I	E	E	I	E	P	L
Template Known Secondary structure		.	.				G	G	G	T	T	T	T
Template Predicted Secondary structure		.	.
Template SS confidence
				70	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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