Job Description P0AFW0 Confidence 99.97% Date Thu Jan 5 11:27:24 GMT 2012 Rank 3 Aligned Residues 131 % Identity 23% Template c2xhcA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of thermotoga maritima n-utilization substance g2 (nusg) Resolution 2.45 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	C	L	A	P	M	I	T	L	E	K	I	V	R	G	K	R	T	A	V	S	E	P	L	F	P	N	Y	L	F	V	E	F	D	P	E	V	I	H	T	T	T	I	N	A	T	R	G	V	S	H	F	V	R	F	G	A	S	P	A	I	V	P	S	A	V	I	H	Q	L	S	V	Y	K	P	K	D	I	V	D
Query Conservation
Alig confidence																				.	.	.	.																																																										.
Template Conservation																				.	.	.	.																																																										.
Template Sequence		V	V	D	Y	S	T	R	K	E	I	R	I	Y	K	T	K	R	R	.	.	.	.	K	L	F	P	G	Y	V	F	V	E	M	I	M	N	D	E	A	Y	N	F	V	R	S	V	P	Y	V	M	G	F	V	S	S	G	G	Q	P	V	P	V	K	D	R	E	M	R	P	I	L	R	L	A	G	L	E	E	Y	.
Template Known Secondary structure						S	S													.	.	.	.		S	S	T	T									S									T	S	T	T							S	S	S	S																T	T		S			.
Template Predicted Secondary structure																				.	.	.	.																																																										.
Template SS confidence
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.		.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																.
Query SS confidence																																.
Query Sequence		P	A	T	P	Y	P	G	D	K	V	I	I	T	E	G	A	F	E	G	F	Q	A	I	F	T	E	P	D	G	E	.	A	R	S	M	L	L	L	N	L	I	N	K	E	I	K	H	S	V	K	N	T	E	F	R	K	L
Query Conservation																																.
Alig confidence																																.
Template Conservation
Template Sequence		E	L	G	F	K	V	G	D	M	V	K	I	I	S	G	P	F	E	D	F	A	G	V	I	K	E	I	D	P	E	R	Q	E	L	K	V	N	V	T	I	F	G	R	E	T	P	V	V	L	H	V	S	E	V	E	K	I
Template Known Secondary structure							T	T							S	S	T	T	T	T										T	T	T	T									T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions