Job Description P0AFW0 Confidence 100.00% Date Thu Jan 5 11:27:24 GMT 2012 Rank 2 Aligned Residues 140 % Identity 98% Template c2ougC_ PDB info PDB header:transcription Chain: C: PDB Molecule:transcriptional activator rfah; PDBTitle: crystal structure of the rfah transcription factor at 2.1a2 resolution Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	W	Y	L	L	Y	C	K	R	G	Q	L	Q	R	A	Q	E	H	L	E	R	Q	A	V	N	C	L	A	P	M	I	T	L	E	K	I	V	R	G	K	R	T	A	V	S	E	P	L	F	P	N	Y	L	F	V	E	F	D	P	E	V	I	H	T	T	T	I	N	A	T	R	G	V	S	H	F	V	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	S	W	Y	L	L	Y	C	K	R	G	Q	L	Q	R	A	Q	E	H	L	E	R	Q	A	V	N	C	L	A	P	M	I	T	L	E	K	I	V	R	G	K	R	T	A	V	S	E	P	L	F	P	N	Y	L	F	V	E	F	D	P	E	V	I	H	T	T	T	I	N	A	T	R	G	V	S	H	F	V	R	F
Template Known Secondary structure											T	T	T											T	T														S	S	S	S								S	S	T	T								T	T	T	S								S	T	T							S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	S	P	A	I	V	P	S	A	V	I	H	Q	L	S	V	Y	K	P	K	D	I	V	D	P	A	T	P	Y	P	G	D	K	V	I	I	T	E	G	A	F	E	G	F	Q	A	I	F	T	E	P	D	G	E	A	R	S	M	L	L	L	N	L	I	N	K	E	I	K	H	S	V	K
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	A	S	P	A	I	V	P	S	A	V	I	H	Q	L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Y	K	K	V	I	I	T	E	G	A	F	E	G	F	Q	A	I	F	T	E	P	D	G	E	A	R	S	M	L	L	L	N	L	I	N	K	E	I	K	H	S	V	K
Template Known Secondary structure		S	S	S	S													.	.	.	.	.	.	.	.	.	.	.	.	.	.		T			T	T	T												T	T		S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.															.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions