Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFW0
Confidence99.38%DateThu Jan 5 11:27:24 GMT 2012
Rank10Aligned Residues56
% Identity20%Templatec2jvvA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   106...110.........120.........130....... ..140.........150.........160.
Predicted Secondary structure 



















.




Query SS confidence 































.























Query Sequence  DPATPYPGDKVIITEGAFEGFQAIFTEPDGEA. RSMLLLNLINKEIKHSVKNTEFRK
Query Conservation         
  
 
  


 
  
 
       .
  
 
   
    
 
    
 
Alig confidence 































.























Template Conservation 
   
  

 
 
  


 
  
 
  
   
 

 
 
  


 
 


    


Template Sequence  PKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK
Template Known Secondary structure 





TT
SSTTTTTTTTTT
TTT
Template Predicted Secondary structure 

























Template SS confidence 
























































   124.....130.........140.........150.........160.........170.........180
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions