Job Description P0AFW0 Confidence 96.57% Date Thu Jan 5 11:27:24 GMT 2012 Rank 14 Aligned Residues 72 % Identity 11% Template c2exuA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain Resolution 2.23 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.															.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	L	L	Y	C	K	R	G	Q	L	Q	R	A	Q	E	H	L	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	A	V	N	C	L	A	P	M	I	T	L	E	K	I	V	R	G	K	R	T	A	V	S	E	P	L	F	P	N	Y	L	F	V	E	F	D	P	E	V	I	H	T	T	T	I	N
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	G	V	R	C	R	P	G	K	E	K	E	L	I	R	K	L	L	K	K	K	F	N	L	D	R	A	M	G	K	K	K	L	K	I	L	S	I	F	Q	R	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	T	G	R	I	Y	I	E	A	P	K	Q	S	V	I	E	K	F	C	N
Template Known Secondary structure								T	T																				S		S	S											T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	T							S										T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330																		.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	R	G	V	S	H	F	V	R	F	G	A	S	P	A	I	V	P	S	A	V	I	H	Q	L	S	V
Query Conservation
Alig confidence										.	.	.	.	.
Template Conservation										.	.	.	.	.
Template Sequence		G	V	P	D	I	Y	I	S	.	.	.	.	.	Q	K	L	L	I	P	V	Q	E	L	P	L	L	L	K
Template Known Secondary structure		T		T	T					.	.	.	.	.							G	G	G
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		351	.	.	.	.	.	.	.						.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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