Return to main results Retrieve Phyre Job Id

Job DescriptionP0AFW0
Confidence96.57%DateThu Jan 5 11:27:24 GMT 2012
Rank14Aligned Residues72
% Identity11%Templatec2exuA_
PDB info PDB header:transcriptionChain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain
Resolution2.23 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20... ......30.........40.........50.........60.........70
Predicted Secondary structure 



..............









Query SS confidence 


















. . . . . . . . . . . . . .














































Query Sequence  YLLYCKRGQLQRAQEHLER. . . . . . . . . . . . . . QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTIN
Query Conservation 


 
    
  
   
  .............. 
   
 
         

      








           
 
Alig confidence 


















..............









.................



















Template Conservation 
 



 




 
  

 
   
        
 
 



 
 .................








     
  

 
Template Sequence  WGVRCRPGKEKELIRKLLKKKFNLDRAMGKKKLKILSIFQRDN. . . . . . . . . . . . . . . . . YTGRIYIEAPKQSVIEKFCN
Template Known Secondary structure 
TT
S
SS






TT.................STT
S
T
Template Predicted Secondary structure 












.................



Template SS confidence 















































































   288.290.........300.........310.........320.........330 .........340.........350
 
   71........80.........90........
Predicted Secondary structure 









Query SS confidence 



























Query Sequence  ATRGVSHFVRFGASPAIVPSAVIHQLSV
Query Conservation     

   
     
  
    
  
  
Alig confidence 







.....














Template Conservation 

  
   .....   



 

  


Template Sequence  GVPDIYIS. . . . . QKLLIPVQELPLLLK
Template Known Secondary structure  T
TT.....

GGG
Template Predicted Secondary structure 




.....




Template SS confidence 



























   351....... .360.........370...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions