Job Description P0AFW0 Confidence 100.00% Date Thu Jan 5 11:27:24 GMT 2012 Rank 1 Aligned Residues 161 % Identity 21% Template c1m1gB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: crystal structure of aquifex aeolicus n-utilization2 substance g (nusg), space group p2(1) Resolution 2.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.										.	.	.	.	.	30	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	S	W	Y	L	L	Y	C	K	R	G	Q	L	Q	R	A	Q	E	H	L	E	R	Q	.	.	.	.	.	.	.	.	.	A	V	N	C	L	A	P	M	I	T	L	E	K	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	K	W	Y	A	L	Q	V	E	P	G	K	E	N	E	A	K	E	N	L	L	K	V	L	E	L	E	G	L	K	D	L	V	D	E	V	I	V	P	A	E	E	K	V	V	I	R	A	Q	G	K	E	K	Y	R	L	S	L	K	G	N	A	R	D	I	S	V	L	G	K	K	G	V	T	T	F	R	I	E	N
Template Known Secondary structure											T	T											T						T		G	G	G																	S	S	S							S	S	S	S									S	S	S								S
Template Predicted Secondary structure
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
																																			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	K	R	T	A	V	S	E	P	L	F	P	N	Y	L	F	V	E	F	D	P	E	V	I	H	T	T	T	I	N	A	T	R	G	V	S	H	F	V	R	F	G	A	S	P	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	E	V	K	V	V	E	S	V	E	G	D	T	C	V	N	A	P	P	I	S	K	P	G	Q	K	I	T	C	K	E	N	K	T	E	A	K	I	V	L	D	N	K	I	F	P	G	Y	I	L	I	K	A	H	M	N	D	K	L	L	M	A	I	E	K	T	P	H	V	F	R	P	V	M	V	G	G	K	P	V
Template Known Secondary structure		S									T	T		G	G	G	T	S			B		S	T	T						T	T	T	T									T	T	S	S	T	T																		T	S	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																									.																										.
Query SS confidence																									.																										.
Query Sequence		I	V	P	S	A	V	I	H	Q	L	S	V	Y	K	P	K	D	I	V	D	P	A	T	.	P	Y	P	G	D	K	V	I	I	T	E	G	A	F	E	G	F	Q	A	I	F	T	E	P	D	.	G	E	A	R	S	M	L	L	L	N	L	I	N	K	E	I	K	H	S	V	K	N	T	E	F	R	K	L
Query Conservation																									.																										.
Alig confidence																									.																										.
Template Conservation
Template Sequence		P	L	K	E	E	E	V	Q	N	I	L	N	Q	I	K	R	G	V	K	P	S	K	V	E	F	E	K	G	D	Q	V	R	V	I	E	G	P	F	M	N	F	T	G	T	V	E	E	V	H	P	E	K	R	K	L	T	V	M	I	S	I	F	G	R	M	T	P	V	E	L	D	F	D	Q	V	E	K	I
Template Known Secondary structure													T	T	T	S	S	S							S			T	T							S	S	T	T	T	T							S			T	T	S	S									T	T									G	G	G
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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