|   |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | Q | I | A | K | A | L | D | D | A | R | V | D | S | I | E | V | A | H | G | D | G | L | Q | G | S | S | F | N | Y | G | F | G | A | H | S | D | L | E | W | I | E | A | A | A | D | V | V | K | H | A | K | I | A | T | L | L | L | P | G | I | G | T | I | H | D | L | K | N | A | W | Q | A | G | A | R | V | V | R | V |
Query Conservation |   |
  |   |
|   |   |   |
|   |   |   |
|
|   |   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
Template Conservation |   |
  |   |   |
|   |   |   |   |   |   |
|
|   |   |
|   |
| . | . | . | . | . | . | . | . |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |
| . | . | . |
|   |   |   |
|
|
|   |   |   |   |   |
|   |   |   |   |   |   |
|
|
| . | . |   |
|
Template Sequence |   |
L | E | A | A | L | A | W | Q | R | S | G | A | E | W | L | H | L | . |
. |
. |
. |
. |
. |
. |
. |
V | D | L | D | A | A | F | G | T | G | D | N | R | A | L | I | A | E | V | A | Q | A | M | D | I | K | . |
. |
. |
V | E | L | S | G | G | I | R | D | D | D | T | L | A | A | A | L | A | T | G | C | T | . |
. |
R | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  | T | S |
|
|
|  |  |  |  |  |  |  |  |  |  |
| S | S |  | . | . | . |  |  |  |  | S | S |
|
| S |  |  |  |  |  |  |  |  |  | T | T |
| S | . | . |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  | . | . | . | . | . | . | . | . |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|  | . | . | . |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
| . | . |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
35 | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | |
|
|
. | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | |
|
100 | . |
  |
  |   |
110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | T | H | C | T | E | A | D | V | S | A | Q | H | I | Q | Y | A | R | E | L | G | M | D | T | V | G | F | L | M | M | S | H | M | . |
. |
. |
. |
. |
. |
. |
. |
T | T | P | E | N | L | A | K | Q | A | K | L | M | E | G | Y | G | A | T | C | I | Y | V | V | D | S | G | G | A | M | N | M | S | D | I | R | D | R | F |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |
|   |
|
|   |
|   |   |   |
|   |   |   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
| . | . | . | . | . |
|
|
|
|
Template Conservation |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |
| . |
|   |
| . | . | . | . | . |   |
|   |
|
Template Sequence |   |
N | L | G | T | A | A | L | E | T | P | E | W | V | A | K | V | I | A | E | H | G | D | K | I | A | V | G | L | D | V | R | G | T | T | L | R | G | R | G | W | T | R | D | G | G | D | L | Y | E | T | L | D | R | L | N | K | E | G | C | A | R | Y | V | V | T | D | I | . |
G | P | N | . |
. |
. |
. |
. |
L | E | L | L |
Template Known Secondary structure |   |
 |  |
|  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  | G | G | G |  |  |  |  |  |  |  |  | T | T |  |  |
|
| S | S | S |
|
|
|
|
| B |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |  |  |
| . |
|
|
| . | . | . | . | . |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
|
|
|
|
|
|
|
|  |  |
|  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |
|
|
| . |
|
|
| . | . | . | . | . |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
102 | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | |
. | 170 | . | |
|
|
|
|
. | . | . | . |
  |
  |   |
182 | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | |
. | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | A | L | K | A | E | L | K | P | E | T | Q | T | G | M | H | A | H | H | N | L | S | L | G | V | A | N | S | I | A | A | V | E | . |
E | G | C | D | R | I | D | A | S | L | A | G | M | G | A | G | A | G | N | A | P | L | E | V | F | I | A | A | A |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |   |
|   |
|   |   |
|   |
|
|
|   |
|
|
|   |
|
|   |
|
|
|   |   | . |
|
|
|   |   |
|
|   |
|
|   |
|
|
|
|
|
|
|
|   |   |   |
|   |
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
| . | . |
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |   | . | . |   |   |
|
|
|
| . | . | . | . |   |
|
|
|   |   |   |
|
|   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|
|
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |
Template Sequence |   |
K | N | V | C | A | A | T | . |
. |
D | R | P | V | V | A | . |
. |
. |
. |
S | G | G | V | S | S | L | D | D | L | R | A | I | A | G | L | V | P | A | G | V | E | G | A | I | V | G | K | A | L | Y | A | K | A | F | T | L | E | E | A | L | E | A | T |
Template Known Secondary structure |   |
 |  |  |  |  | T |
| . | . | S | S |
|  |  |  | . | . | . | . |  | S |
|
|
| S |  |  |  |  |  |  |  |  | T | T | G | G | G | T |  |  |  |  |  |  |
|  |  |  |  | T | T | S | S |
|  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
| . | . |
|
|
|  |  |  | . | . | . | . |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
183 | . | . | . | . | . | . | |
|
190 | . | . | . | . | . | |
|
|
|
. | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . |
  |