Job Description P51020 Confidence 64.69% Date Thu Jan 5 12:04:49 GMT 2012 Rank 400 Aligned Residues 134 % Identity 16% Template c3n2bD_ PDB info PDB header:lyase Chain: D: PDB Molecule:diaminopimelate decarboxylase; PDBTitle: 1.8 angstrom resolution crystal structure of diaminopimelate2 decarboxylase (lysa) from vibrio cholerae. Resolution 1.80 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	I	A	K	A	L	D	D	A	R	V	D	S	I	E	V	A	H	G	D	G	L	Q	G	S	S	F	N	Y	G	F	G	A	H	S	D	L	E	W	I	E	A	A	A	D	V	V	K	H	A	K	I	A	T	L	L	L	P	G	I	G	T	I	H	D	L	K	N	A	W	Q	A	G	A	R	V	V	R	V
Query Conservation
Alig confidence														.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation														.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Sequence		L	G	V	L	N	T	L	A	R	L	G	S	.	G	F	D	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	G	E	L	E	R	V	L	A	A	G	G	D	P	S	K	V	.	.	V	F	S	G	V	G	K	T	E	A	E	M	K	R	A	L	Q	L	K	I	K	C	F	N	V
Template Known Secondary structure											T	T		.					S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S										T	T			G	G	G		.	.					T	T												T	T		S
Template Predicted Secondary structure														.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.																		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	H	C	T	E	A	D	V	S	A	Q	H	I	Q	Y	A	R	E	L	G	M	D	T	V	G	F	L	M	M	S	H	M	T	T	P	E	N	L	A	K	Q	A	K	L	M	E	G	Y	G	A	T	C	I	Y	V	V	D	S	G	G	A	M	N	M	S	D	I	R	D	R	F	R	A	L	K	A	E	L	K
Query Conservation
Alig confidence		.	.	.	.																																															.	.	.	.	.	.	.	.	.				.																.	.
Template Conservation		.	.	.	.																																															.	.	.	.	.	.	.	.	.				.																.	.
Template Sequence		.	.	.	.	E	S	E	P	E	L	Q	R	L	N	K	V	A	G	E	L	G	V	K	A	P	I	S	L	R	I	N	P	D	V	D	A	K	T	H	P	Y	I	S	T	G	L	R	D	N	K	.	.	.	.	.	.	.	.	.	F	G	I	.	T	F	D	R	A	A	Q	V	Y	R	L	A	H	S	L	.	.
Template Known Secondary structure		.	.	.	.		S															T									B						T	T	T											S	S	.	.	.	.	.	.	.	.	.		S	B	.		G	G	G											S	.	.
Template Predicted Secondary structure		.	.	.	.																																															.	.	.	.	.	.	.	.	.				.																.	.
Template SS confidence
						126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.										.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		190	.	.	.	.		.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		P	E	T	Q	T	.	G	M	H	A	H
Query Conservation							.
Alig confidence							.
Template Conservation
Template Sequence		P	N	L	D	V	H	G	I	D	C	H
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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