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Job DescriptionP51020
Confidence96.96%DateThu Jan 5 12:04:49 GMT 2012
Rank60Aligned Residues234
% Identity15%Templatec3js3C_
PDB info PDB header:lyaseChain: C: PDB Molecule:3-dehydroquinate dehydratase; PDBTitle: crystal structure of type i 3-dehydroquinate dehydratase (arod) from2 clostridium difficile with covalent reaction intermediate
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.... .....30.........40.........50.........60.........70.........
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Query Sequence  GKKLYISDVTLRDGMHAIRHQY. . . SLENVRQIAKALDDARVDSIEVAHGDGLQGSSFNYGFGAHSDLEWIEAAADVVKH
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Template Sequence  KRKVQVKNITIGEGRPKICVPIIGKNKKDIIKEAKELKDACLDIIE. . . . . . WRVDFFENVENIKEVKEVLYELRSYIHD
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TTTSSS


SSTTTSS
S......GGG
TTTT
TT
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   2.......10.........20.........30.........40....... ..50.........60.........70.....
 
   80.........90. ........100... ......110.........120.........130......... 140.......
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Query Sequence  AKIATLLLPGIG. . . . . . . . . . TIHDLKNAWQAG. ARVVRVATHCTEADVSAQHIQYARELGMDTVGFLMM. SHMTTPEN
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Template Sequence  IPLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGD. EVIDEVVNFAHKKEVKVIISNHDFNKTPKKEE
Template Known Secondary structure  S



GGGT
S



TS

SGGG
.TT
SS



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   76...80.........90.........100.........110.........120.. .......130.........140.........150....
 
   148.150.........160.........170.........180.........190.........200.........210.........220.......
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Query Sequence  LAKQAKLMEGYGATCIYVVDSGGAMNMSDIRDRFRALKAELKPETQTGMHAHHNLSLGVANSIAAVEEGCDRIDASLAGM
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Template Sequence  IVSRLCRMQELGADLPKIAVMPQ. . NEKDVLVLLEATNEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKS.
Template Known Secondary structure  TT
S

S..STT
SS
B
TGGGT

B

BSSS.
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   155....160.........170....... ..180.........190.........200.........210.........220.........230.
 
   228.230.........240......
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Query Sequence  GAGAGNAPLEVFIAAADKL
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Template Sequence  VSAPGQISFKELNSVLNLL
Template Known Secondary structure 
SSTT

B
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   232.......240.........250
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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