Job Description P51020 Confidence 100.00% Date Thu Jan 5 12:04:49 GMT 2012 Rank 2 Aligned Residues 315 % Identity 20% Template c3ivuB_ PDB info PDB header:transferase Chain: B: PDB Molecule:homocitrate synthase, mitochondrial; PDBTitle: homocitrate synthase lys4 bound to 2-og Resolution 2.72 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	K	K	L	Y	I	S	D	V	T	L	R	D	G	M	H	A	I	R	H	Q	Y	S	L	E	N	V	R	Q	I	A	K	A	L	D	D	A	R	V	D	S	I	E	V	A	H	G	D	G	L	Q	G	S	S	F	N	Y	G	F	G	A	H	S	D	L	E	W	I	E	A	A	A	D	V	V	K	H	A	K
Query Conservation
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	N	N	F	S	I	I	E	S	T	L	R	E	G	E	Q	F	A	N	A	F	F	D	T	E	K	K	I	Q	I	A	K	A	L	D	N	F	G	V	D	Y	I	E	L	T	S	P	.	.	.	.	.	.	.	.	.	.	.	V	A	S	E	Q	S	R	Q	D	C	E	A	I	C	K	L	G	L	K	C	K
Template Known Secondary structure			T	T	S							T	T	T	G	G	G	G	S	T	T																			T		S							G	.	.	.	.	.	.	.	.	.	.	.	G	G													T	S			S	S
Template Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.												.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.													.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	T	L	L	L	P	G	I	G	T	I	H	D	L	K	N	A	W	Q	A	G	A	R	V	V	R	V	A	T	H	C	T	E	.	.	.	.	.	.	.	.	.	.	.	.	A	D	V	S	A	Q	H	I	Q	Y	A	R	E	L	G	M	D	T	V	G	F	L	M	M	S	H	M	T	T	P	E	N	L	A
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.
Template Sequence		I	L	T	H	.	.	.	I	R	C	H	M	D	D	A	R	V	A	V	E	T	G	V	D	G	V	D	V	V	I	G	T	S	Q	Y	L	R	K	Y	S	H	D	M	T	Y	I	I	D	S	A	T	E	V	I	N	F	V	K	S	K	G	I	E	V	R	F	S	S	E	D	S	F	R	S	D	L	V	D	L	L
Template Known Secondary structure						.	.	.			S											T	T		S								G	G	G																										T	T								T	T	G	G	G	S
Template Predicted Secondary structure						.	.	.
Template SS confidence
		100	.	.	.				.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	A	K	L	M	E	G	Y	G	A	T	C	I	Y	V	V	D	S	G	G	A	M	N	M	S	D	I	R	D	R	F	R	A	L	K	A	E	L	K	P	E	T	Q	T	G	M	H	A	H	H	N	L	S	L	G	V	A	N	S	I	A	A	V	E	E	G	C	D	R	I	D	A	S	L	A	G	M	G	A
Query Conservation
Alig confidence																																									.	.
Template Conservation																																									.	.
Template Sequence		S	L	Y	K	A	V	D	K	I	G	V	N	R	V	G	I	A	D	T	V	G	C	A	T	P	R	Q	V	Y	D	L	I	R	T	L	R	G	V	V	.	.	S	C	D	I	E	C	H	F	H	N	D	T	G	M	A	I	A	N	A	Y	C	A	L	E	A	G	A	T	H	I	D	T	S	I	L	G	I	G	E
Template Known Secondary structure													S							S	S	S																			.	.	S	S							B		T	T	S													T							B	G	G	G		S	S
Template Predicted Secondary structure																																									.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.				250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.					.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure																						.	.	.																		.	.	.	.
Query SS confidence																						.	.	.																		.	.	.	.
Query Sequence		G	A	G	N	A	P	L	E	V	F	I	A	A	A	D	K	L	G	W	Q	.	.	.	H	G	T	D	L	Y	A	L	M	D	A	A	D	D	L	V	R	.	.	.	.	P	L	Q	D	R	P	V	R	V	D	R	E	T	L	A	L	G	Y	A	G	V	Y	S	S	F	L	R	H	C	E	T	A	A	A	R	Y
Query Conservation																						.	.	.																		.	.	.	.
Alig confidence																						.	.	.																		.	.	.	.																														.	.	.
Template Conservation																																																																											.	.	.
Template Sequence		R	N	G	I	T	P	L	G	A	L	L	A	R	M	Y	V	T	D	R	E	Y	I	T	H	K	Y	K	L	N	Q	L	R	E	L	E	N	L	V	A	D	A	V	E	V	Q	I	P	F	N	N	Y	I	T	G	M	C	A	F	T	H	K	A	G	I	H	A	S	T	Y	E	I	L	K	.	.	.	P	E	D	F
Template Known Secondary structure		T	T		B		B																				S		G	G	G													T					T	T		T	T	T	S	T	T	T	T					S	T	T							S		.	.	.	G	G	G	G
Template Predicted Secondary structure																																																																											.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.				330	.	.	.
		303											.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.
Query Sequence		G	.	.	.	.	.	.	.	.	.	.	L	S	A	V	D	I	L	V	E	L	G	K	R	R	M	V	G	G	Q	E	D	M	I	V	D	V	A	L	D	L	R	N
Query Conservation			.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	M	S	R	Y	V	H	V	G	S	R	L	T	G	W	N	A	I	K	S	R	A	E	Q	L	N	L	H	L	T	D	A	Q	A	K	E	L	T	V	R	I	K	K
Template Known Secondary structure		T									S															T	T
Template Predicted Secondary structure
Template SS confidence
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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