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Job DescriptionP51020
Confidence95.91%DateThu Jan 5 12:04:49 GMT 2012
Rank87Aligned Residues240
% Identity11%Templatec3chvA_
PDB info PDB header:metal binding proteinChain: A: PDB Molecule:prokaryotic domain of unknown function (duf849) with a tim PDBTitle: crystal structure of a prokaryotic domain of unknown function (duf849)2 member (spoa0042) from silicibacter pomeroyi dss-3 at 1.45 a3 resolution
Resolution1.45 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10. ........20.........30.........40.........50.........60.........70.........
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Query Sequence  GKKLYISDV. . . TLRDGMHAIRHQYSLENVRQIAKALDDARVDSIEVAHGDGLQGSSFNYGFGAHSDLEWIEAAADVVKH
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Template Sequence  NKPCIICVAITGSVPTKADNPAVPITVSEQVESTQEAFEAGAAIAHC. HVRNDDGTPSSDPDRFA. . . RLTEGLHTHCPG
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   6...10.........20.........30.........40.........50.. .......60......... 70.........80.
 
   80.........90.........100.........110. ........120.........130.........140.........150
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Query Sequence  AKIATLLLPGIGTIHDLKNAWQAGARVVRVAT. . . . . . . . . HCTEADVSAQHIQYARELGMDTVGFLMMSHMTTPENLAK
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Template Sequence  XIVQFSTGGRSGAGQARGGXLPLKPDXASLSVGSNNFPSRVYENPPDLVDWLAAQXRSYRVTPEIEAFDL. . SHILRAID
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GGGGGTTGGG

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   82.......90.........100.........110.........120.........130.........140.........150. ........
 
   151........160.........170.........180..... ....190.........200.........210.........220 .....
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Query Sequence  QAKLMEGYGATCIYVVDSGGAMNMSDIRDRFRALK. . AELKPETQTGMHAHHNLSLGVANSIAAVEEGCDRI. . . DASLA
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Template Sequence  XHGRGLLYGKLYVQFVXGVKNAXPADREVFDFYVRXXRTRAPQAEWCAAGIGANQLTV. NEWAIAAGGHTRTGLEDNIRL
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   160.........170.........180.........190.........200.........210....... ..220.........230........
 
   226...230. ..... ...240.........
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Query Sequence  GMGAGA. GNAPL. EVFIAAADKLGWQ
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Template Sequence  DRQTLAPSNAALVRRSVELCDKYQRP
Template Known Secondary structure  SSS
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   239240.........250.........260....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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