 |
Job Description | P51020 | Confidence | 49.03% | Date | Thu Jan 5 12:04:49 GMT 2012 |
Rank | 485 | Aligned Residues | 144 |
% Identity | 17% | Template | c1mraA_ |
PDB info |
PDB header:racemase | Chain: A: PDB Molecule:mandelate racemase; |
PDBTitle: mandelate racemase mutant d270n co-crystallized with (s)-atrolactate
|
Resolution | 2.10 Å |
|
 |
  |   |
93 | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | |
130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | H | D | L | K | N | A | W | Q | A | G | A | R | V | V | R | V | A | T | H | C | T | E | A | D | V | S | A | Q | H | I | Q | Y | A | R | E | L | . |
G | M | D | T | V | G | F | L | M | M | S | H | M | T | T | P | E | N | L | A | K | Q | A | K | L | M | E | G | Y | G | A | T | C | I | Y | V | V | D | S | G | G | A |
Query Conservation |   |
  |   |   |
|   |   |
|   |   |   |
|   |   |   |
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   | . |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |
|   |
|   |
|
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|   |   |
|
|
|
| . | . | . | . | . |
Template Sequence |   |
T | E | R | A | V | T | A | A | E | L | G | F | R | A | V | K | T | K | I | G | Y | P | A | L | D | Q | D | L | A | V | V | R | S | I | R | Q | A | V | G | D | D | F | G | I | M | V | D | Y | N | Q | S | L | D | V | P | A | A | I | K | R | S | Q | A | L | Q | Q | E | G | V | T | W | I | E | E | P | . |
. |
. |
. |
. |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T |
| S |  |  |  |  |  |
|
|
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S | S |  |  |  |  |  |
| T | T |
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |  |  |  |
|
| . | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
| . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
149 | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | |
|
|
|
|
  |
  |   |
172 | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | |
. | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
| . |
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | N | M | S | D | I | R | D | R | F | R | A | L | K | A | E | L | K | P | E | T | Q | T | G | M | H | A | H | H | N | L | S | L | G | V | A | N | S | I | A | A | V | E | E | G | . |
C | D | R | I | D | A | S | L | A | G | M | G | A | G | A | G | N | A | P | L | E | V | F | I | A | A | A | D | K | L | G | W | Q | H |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |
|   |   |
|   |
|
|
|   |
|
|
|   |
|
|   |
|
|
|   |   |
|
| . |
|   |   |
|
|   |
|
|   |
|
|
|
|
|
|
|
|   |   |   |
|   |
|
|   |   |
|   |   |   |
|   |   |
|
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   | . | . |   |
|
|
|
|   | . | . | . |
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |
| . | . | . |
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |
Template Sequence |   |
. |
T | L | Q | H | D | Y | E | G | H | Q | R | I | Q | S | K | L | . |
. |
N | V | P | V | Q | M | . |
. |
. |
G | E | N | W | L | G | P | E | E | M | F | K | A | L | S | I | G | A | C | R | L | A | M | P | N | A | M | K | I | G | . |
. |
. |
G | V | T | G | W | I | R | A | S | A | L | A | Q | Q | F | G | I | P | M |
Template Known Secondary structure |   |
. | S |
| T | T |
|  |  |  |  |  |  |  |  |  | T |
| . | . | S | S |
|  |  |  | . | . | . |
| T | T |
|
| S |  |  |  |  |  |  |  |  |  | T | T |
|
| S |  |  |
|
| B | T | T | T | T | T | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
| B |
Template Predicted Secondary structure |   |
. |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|  |  |  |  | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
|
|
| . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
224 | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | |
|
240 | . | . | . | . | . | |
|
|
. | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | |
|
|
. | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|