Job Description P75750 Confidence 100.00% Date Thu Jan 5 12:13:48 GMT 2012 Rank 3 Aligned Residues 462 % Identity 31% Template c3ohnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane usher protein fimd; PDBTitle: crystal structure of the fimd translocation domain Resolution 3.01 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	L	M	D	Y	N	L	F	A	S	S	Y	R	P	Q	D	G	S	S	S	T	N	L	N	A	Y	G	T	A	G	I	N	A	G	A	W	R	L	R	S	D	Y	Q	L	N	K	T	D	S	E	D	N	H	D	Q	S	G	G	I	S	R	T	Y	L	F	R	P	L	P	Q	L	G	S	K	L	T	L	G	E
Query Conservation
Alig confidence																																																					.	.	.	.	.
Template Conservation																																																					.	.	.	.	.
Template Sequence		A	G	L	L	N	Y	N	F	S	G	N	S	V	Q	N	R	I	G	G	N	S	H	Y	A	Y	L	N	L	Q	S	G	L	N	I	G	A	W	R	L	R	D	N	T	T	W	S	Y	N	S	S	N	.	.	.	.	.	K	W	Q	H	I	N	T	W	L	E	R	D	I	I	P	L	R	S	R	L	T	L	G	D
Template Known Secondary structure																	S	T	T																S	S	S																.	.	.	.	.														T	T	T	T
Template Predicted Secondary structure																																																					.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.						190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.		.	.	.	.	310	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		T	D	F	S	S	N	I	F	D	G	F	S	Y	T	G	A	A	L	A	S	D	D	R	M	L	P	W	E	L	R	G	Y	A	P	Q	I	S	G	I	A	Q	T	N	A	T	V	T	I	S	Q	S	G	R	V	I	Y	Q	K	K	V	P	P	G	P	F	I	I	D	D	L	N	.	Q	S	V	Q	G	T	L	D
Query Conservation																																																																									.
Alig confidence																									.	.	.	.	.	.	.	.	.	.																																							.
Template Conservation																									.	.	.	.	.	.	.	.	.	.
Template Sequence		G	Y	T	Q	G	D	I	F	D	G	I	N	F	R	G	A	Q	L	A	S	D	D	N	.	.	.	.	.	.	.	.	.	.	P	V	I	H	G	I	A	R	G	T	A	Q	V	T	I	K	Q	N	G	Y	D	I	Y	N	S	T	V	P	P	G	P	F	T	I	N	D	I	Y	A	A	G	N	S	G	D	L	Q
Template Known Secondary structure						T	T	S	S																.	.	.	.	.	.	.	.	.	.								S	S	S								T	T										S											T	T	T	T	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.											.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	V	T	E	E	D	G	R	V	N	N	F	Q	V	S	A	A	S	T	P	F	L	T	R	Q	G	Q	V	R	Y	K	L	A	A	G	Q	P	R	P	S	M	S	H	Q	T	E	N	E	T	F	F	S	N	E	V	S	W	G	M	L	S	N	T	S	L	Y	G	G	L	L	I	S	D	D	D	Y	H	S	A
Query Conservation
Alig confidence																																											.																																.
Template Conservation																																											.																																.
Template Sequence		V	T	I	K	E	A	D	G	S	T	Q	I	F	T	V	P	Y	S	S	V	P	L	L	Q	R	E	G	H	T	R	Y	S	I	T	A	G	E	Y	R	S	G	.	N	A	Q	Q	E	K	P	R	F	F	Q	S	T	L	L	H	G	L	P	A	G	W	T	I	Y	G	G	T	Q	L	A	.	D	R	Y	R	A	F
Template Known Secondary structure							S	S	S																		T	T															.	S	T	T																G	G	G											.	S	S
Template Predicted Secondary structure																																											.																																.
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.		.	.	.	.	.	.
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.					.	.	.
Predicted Secondary structure																																																																											.	.	.	.
Query SS confidence																																																																											.	.	.	.
Query Sequence		A	M	G	I	G	Q	N	M	L	W	L	G	A	L	S	F	D	V	T	W	A	S	S	H	F	D	T	Q	Q	D	E	R	G	L	S	Y	R	F	N	Y	S	K	Q	V	D	A	T	N	S	T	I	S	L	A	A	Y	R	F	S	D	R	H	F	H	S	Y	A	N	Y	L	D	H	K	.	.	.	.	Y	N	D
Query Conservation																																																																											.	.	.	.
Alig confidence																																														.	.	.																											.	.	.	.
Template Conservation																																														.	.	.
Template Sequence		N	F	G	I	G	K	N	M	G	A	L	G	A	L	S	V	D	M	T	Q	A	N	S	T	L	P	D	D	S	Q	H	D	G	Q	S	V	R	F	L	Y	N	K	S	L	.	.	.	G	T	N	I	Q	L	V	G	Y	R	Y	S	T	S	G	Y	F	N	F	A	D	T	T	Y	S	R	M	N	G	T	D	Y	Y
Template Known Secondary structure											T	T															T	T																		.	.	.														T	T								S	S		S
Template Predicted Secondary structure																																														.	.	.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.				.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	D	A	Q	D	E	K	Q	T	I	S	L	S	V	G	Q	P	I	T	P	L	N	L	N	L	Y	A	N	L	L	H	Q	T	W	W	N	A	D	A	S	T	T	A	N	I	T	A	G	F	N	V	D	I	G	D	W	R	D	I	S	I	S	T	S	F	N	T	T	H	Y	E	D	K	D	R	D	N	Q	I	Y
Query Conservation
Alig confidence																								.																				.														.																		.
Template Conservation																								.																				.														.																		.
Template Sequence		N	L	A	Y	N	K	R	G	K	L	Q	L	T	V	T	Q	Q	L	G	R	T	S	.	T	L	Y	L	S	G	S	H	Q	T	Y	W	G	T	S	N	V	D	E	.	Q	F	Q	A	G	L	N	T	A	F	E	D	I	.	N	W	T	L	S	Y	S	L	T	K	N	A	W	Q	K	G	R	.	D	Q	M	L	A
Template Known Secondary structure			T	T	S															T	T	T		.												S	S	S						.											S	S		.												T	T	T				.
Template Predicted Secondary structure																								.																				.														.																		.
Template SS confidence
		475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.		.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.		.	.	.	.	520	.	.	.	.	.	.	.	.		.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.		.	.	.	.	550
		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.		.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		L	S	I	S	L	P	F	G	N	G	G	R	V	G	Y	D	M	Q	N	S	S	H	S	T	I	H	R	M	S	W	N	D	T	L	D	E	R	N	S	W	G	M	S	A	G	L	Q	S	D	.	R	P	D	N	G	A	Q	V	S	G	N	Y	Q	H	L	S	S	A	G	E	W	D	I	S	G	T	Y	A	A	S
Query Conservation																																																			.
Alig confidence																																																			.																												.
Template Conservation																																																																															.
Template Sequence		L	N	V	N	I	P	F	A	S	A	S	Y	S	M	S	H	D	L	N	G	R	M	T	N	L	A	G	V	Y	G	T	L	L	E	D	N	N	L	S	Y	S	V	Q	T	G	Y	A	G	G	G	D	G	N	S	G	S	T	G	Y	A	T	L	N	Y	R	G	G	Y	G	N	A	N	I	G	Y	S	H	.	S	D
Template Known Secondary structure																					T	T													T	T	T	T												T	T	S	S														S	S	S										.		S
Template Predicted Secondary structure																																																																															.
Template SS confidence
		551	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.		.	.
		629	630	.	.	.	.	.	.	.	.	.	640	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	S	S	V	S	S	S	W	S	G	S	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	K	Q	L	Y	Y	G	V	S	G	G	V
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		644	.	.	.	.	.	650	.	.	.	.	.	.