Job Description P75750 Confidence 100.00% Date Thu Jan 5 12:13:48 GMT 2012 Rank 2 Aligned Residues 472 % Identity 36% Template c2vqiA_ PDB info PDB header:transport Chain: A: PDB Molecule:outer membrane usher protein papc; PDBTitle: structure of the p pilus usher (papc) translocation pore Resolution 3.2 Å

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		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.					.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																																							.	.	.	.
Query SS confidence																																																							.	.	.	.
Query Sequence		V	L	M	D	Y	N	L	F	A	S	S	Y	R	P	Q	D	G	S	S	S	T	N	L	N	A	Y	G	T	A	G	I	N	A	G	A	W	R	L	R	S	D	Y	Q	L	N	K	T	D	S	E	D	N	H	.	.	.	.	D	Q	S	G	G	I	S	R	T	Y	L	F	R	P	L	P	Q	L	G	S	K	L	T
Query Conservation																																																							.	.	.	.
Alig confidence																																			.																				.	.	.	.
Template Conservation																																			.
Template Sequence		L	X	L	D	Y	N	L	N	G	T	V	S	R	N	Y	Q	G	G	D	S	H	Q	F	S	Y	N	G	T	V	G	G	N	L	.	P	W	R	L	R	A	D	Y	Q	G	S	Q	E	Q	S	R	Y	N	G	E	K	T	T	N	R	N	F	T	W	S	R	F	Y	L	F	R	A	I	P	R	W	R	A	N	L	T
Template Known Secondary structure																S	S	S															B		.																		S	S																				T	T	T	S
Template Predicted Secondary structure																																			.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	E	T	D	F	S	S	N	I	F	D	G	F	S	Y	T	G	A	A	L	A	S	D	D	R	M	L	P	W	E	L	R	G	Y	A	P	Q	I	S	G	I	A	Q	T	N	A	T	V	T	I	S	Q	S	G	R	V	I	Y	Q	K	K	V	P	P	G	P	F	I	I	D	D	L	N	Q	S	V	Q	G	T
Query Conservation
Alig confidence																									.	.	.
Template Conservation																									.	.	.
Template Sequence		L	G	E	N	N	I	N	S	D	I	F	R	S	W	S	Y	T	G	A	S	L	E	S	.	.	.	X	L	P	P	R	L	R	G	Y	A	P	Q	I	T	G	I	A	E	T	N	A	R	V	V	V	S	Q	Q	G	R	V	L	Y	D	S	X	V	P	A	G	P	F	S	I	Q	D	L	D	S	S	V	R	G	R
Template Known Secondary structure										S	S	S													.	.	.				G	G	G	S											S	S	S								T	T										S										T	T			S
Template Predicted Secondary structure																									.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.				.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	V	K	V	T	E	E	D	G	R	V	N	N	F	Q	V	S	A	A	S	T	P	F	L	T	R	Q	G	Q	V	R	Y	K	L	A	A	G	Q	P	R	P	S	M	S	H	Q	T	E	N	E	T	F	F	S	N	E	V	S	W	G	M	L	S	N	T	S	L	Y	G	G	L	L	I	S	D	D	D	Y	H
Query Conservation
Alig confidence																																											.	.	.	.	.																														.
Template Conservation																																											.	.	.	.	.																														.
Template Sequence		L	D	V	E	V	I	E	Q	N	G	R	K	K	T	F	Q	V	D	T	A	S	V	P	Y	L	T	R	P	G	Q	V	R	Y	K	L	V	S	G	R	S	R	.	.	.	.	.	G	Y	E	G	P	V	F	A	T	G	E	A	S	W	G	L	S	N	Q	W	S	L	Y	G	G	A	V	L	A	.	G	D	Y	N
Template Known Secondary structure									T	T	S																		T	T													.	.	.	.	.																	S	S	S											.	S	S
Template Predicted Secondary structure																																											.	.	.	.	.																														.
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.						.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.		.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	A	M	G	I	G	Q	N	M	L	W	L	G	A	L	S	F	D	V	T	W	A	S	S	H	F	D	T	Q	Q	D	E	R	G	L	S	Y	R	F	N	Y	S	K	Q	V	D	A	T	N	S	T	I	S	L	A	A	Y	R	F	S	D	R	H	F	H	S	Y	A	N	Y	L	D	H	K	Y	N	D	S	D
Query Conservation
Alig confidence																																																.	.	.	.
Template Conservation																																																.	.	.	.
Template Sequence		A	L	A	A	G	A	G	W	D	L	G	V	P	G	T	L	S	A	D	I	T	Q	S	V	A	R	I	E	G	E	R	T	F	Q	G	K	S	W	R	L	S	Y	S	K	R	F	.	.	.	.	D	D	I	T	F	A	G	Y	R	F	S	E	R	N	Y	X	T	X	E	Q	Y	L	N	A	R	Y	R	N	D	Y
Template Known Secondary structure												S	S	S															T	T	T																	.	.	.	.													T	T													S
Template Predicted Secondary structure																																																.	.	.	.
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.					430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	D	E	K	Q	T	I	S	L	S	V	G	Q	P	I	T	P	L	N	L	N	L	Y	A	N	L	L	H	Q	T	W	W	N	A	D	A	S	T	T	A	N	I	T	A	G	F	N	V	D	I	G	D	W	R	D	I	S	I	S	T	S	F	N	T	T	H	Y	E	D	K	D	R	D	N	Q	I	Y	L	S
Query Conservation
Alig confidence																																																				.																				.
Template Conservation																																																				.																				.
Template Sequence		S	S	R	E	K	E	X	Y	T	V	T	L	N	K	N	V	A	D	W	N	T	S	F	N	L	Q	Y	S	R	Q	T	Y	W	D	I	R	K	T	D	Y	Y	T	V	S	V	N	R	Y	F	N	.	V	F	L	Q	G	V	A	V	G	L	S	A	S	R	S	K	Y	L	G	.	R	D	N	D	S	A	Y	L	R
Template Known Secondary structure																		T	T	T	T													S	S	S																.	S	S	S															T	T	.
Template Predicted Secondary structure																																																				.																				.
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.		.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.		.	.	.	.	.	.	.	540	.
		552	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	L	P	F	G	N	G	G	R	V	G	Y	D	M	Q	N	S	S	H	S	T	I	H	R	M	S	W	N	D	T	L	D	E	R	N	S	W	G	M	S	A	G	L	Q	S	D	R	P	D	N	G	A	Q	V	S	G	N	Y	Q	H	L	S	S	A	G	E	W	D	I	S	G	T	Y	A	A	S	D	Y	S
Query Conservation
Alig confidence																																																				.
Template Conservation																																																				.
Template Sequence		I	S	V	P	L	G	T	G	T	A	S	Y	S	G	S	X	S	N	D	R	Y	V	N	X	A	G	Y	T	D	T	F	N	D	G	L	D	S	Y	S	L	N	A	G	L	N	S	G	L	T	S	.	Q	R	Q	I	N	A	Y	Y	S	H	R	S	P	L	A	N	L	S	A	N	I	A	S	L	Q	K	G	Y	T
Template Known Secondary structure							T	T											T	T													G	G	G	T																.													T	T											T	T	S
Template Predicted Secondary structure																																																				.
Template SS confidence
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.		.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.
		632	.	.	.	.	.	.	.	640	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	S	S	S	W	S	G	S	F	T	A	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	F	G	V	S	A	S	G	G	A	T	I	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		624	.	.	.	.	.	630	.	.	.	.	.	.