 |
| Job Description | P62552 | | Confidence | 2.65% | Date | Thu Jan 5 12:07:35 GMT 2012 |
| Rank | 33 | Aligned Residues | 32 |
| % Identity | 6% | Template | c3nhzA_ |
| PDB info |
PDB header:dna binding protein | Chain: A: PDB Molecule:two component system transcriptional regulator mtra; |
PDBTitle: structure of n-terminal domain of mtra
|
| Resolution | 2.50 Å |
|
|   |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
I | T | V | T | V | D | S | D | S | Y | Q | L | L | K | A | Y | D | V | N | I | S | G | L | V | S | T | T | M | Q | N | E | A |
| Query Conservation |   |
|
|
|   |   |
|
|
|   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |
|   |
|
|   |   |   |   |   |
| Template Sequence |   |
V | M | L | T | A | K | T | D | T | V | D | V | V | L | G | L | E | S | G | A | D | D | Y | I | M | K | P | F | K | P | K | E |
| Template Known Secondary structure |   |
 |  |  |  |  | T | T |
| S | S |
|  |  |  |  |  |  | T | T |
|
|  |  |  |  |  | S |
|
|  |  |  |
| Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|