Job Description P16916 Confidence 9.13% Date Wed Jan 25 15:20:39 GMT 2012 Rank 59 Aligned Residues 248 % Identity 13% Template c3jroA_ PDB info PDB header:transport protein, structural protein Chain: A: PDB Molecule:fusion protein of protein transport protein sec13 PDBTitle: nup84-nup145c-sec13 edge element of the npc lattice Resolution 4.00 Å

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		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490			.	.	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		D	G	S	V	T	Q	S	Q	F	D	A	V	G	R	L	R	A	Q	T	D	A	A	G	R	T	T	E	Y	S	P	D	V	V	T	G	L	I	T	R	I	T	T	P	D	G	R	A	S	A	F	Y	Y	N	H	H	N	Q	L	T	S	A	T	G	P	D	G	L	E	L	R	R	E	Y	D	.	.	E	L	G	R
Query Conservation																																																																												.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	E	L	I	H	D	A	V	L	D	Y	Y	G	K	R	L	A	T	C	S	S	D	K	T	I	K	I	F	E	V	E	G	E	T	H	K	L	I	D	T	L	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	E	G	P	V	W	R	V	D	W	A	H	P	K	F	G	T
Template Known Secondary structure												S	S	S								T	T	T									T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S										T	T	S		S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.																					.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		495	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.			.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.			.	.	.	.	.	570
Predicted Secondary structure																																									.	.																																.	.
Query SS confidence																																									.	.																																.	.
Query Sequence		L	I	Q	E	T	A	P	D	G	D	I	T	R	Y	R	Y	D	N	P	H	S	D	L	P	C	A	T	E	D	A	T	G	S	R	K	T	M	T	W	.	.	S	R	Y	G	Q	L	L	S	F	T	D	C	S	G	Y	V	T	R	Y	D	H	D	R	F	G	Q	M	T	A	V	H	.	.	R	E	E	G	L	S
Query Conservation																																									.	.																																.	.
Alig confidence																																									.	.																																.	.
Template Conservation
Template Sequence		I	L	A	S	C	S	Y	D	G	K	V	L	I	W	K	E	E	N	G	R	W	S	Q	I	A	V	H	A	V	H	S	A	S	V	N	S	V	Q	W	A	P	H	E	Y	G	P	L	L	L	V	A	S	S	D	G	K	V	S	V	V	E	F	K	E	N	G	T	T	S	P	I	I	I	D	A	H	A	I	G	V
Template Known Secondary structure								T	T	S									T	T												S	S										G	G	G		S							T	T	S									S	S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		571	.	.	.	.	.	.					.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.					.	610	.	.	.	.	.	.	.	.	.					620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.																																.	.	.	.												.	.	.	.
Query SS confidence									.	.	.	.																																.	.	.	.												.	.	.	.
Query Sequence		Q	Y	R	A	Y	D	S	.	.	.	.	R	G	Q	L	I	A	V	K	D	T	Q	G	H	E	T	R	Y	E	Y	N	I	A	G	D	L	T	A	V	I	A	P	.	.	.	.	D	G	S	R	N	G	T	Q	Y	D	A	.	.	.	.	W	G	K	A	V	R	T	T	Q	G	G	L	T	R	S	M	E	Y	D
Query Conservation									.	.	.	.																																.	.	.	.												.	.	.	.
Alig confidence									.	.	.	.																																.	.	.	.												.	.	.	.
Template Conservation
Template Sequence		N	S	A	S	W	A	P	A	T	T	K	E	S	R	K	F	V	T	G	G	A	D	N	L	V	K	I	W	K	Y	N	S	D	A	Q	T	Y	V	L	E	S	T	L	E	G	H	S	D	W	V	R	D	V	A	W	S	P	T	V	L	L	R	S	Y	L	A	S	V	S	Q	D	R	T	C	I	I	W	T	Q	D
Template Known Secondary structure												G	G	G								T	T	S									T	T	T	T												S	S												S	S	S								S	S	S								S
Template Predicted Secondary structure
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		639	640	.						.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.
Predicted Secondary structure					.	.	.	.	.
Query SS confidence					.	.	.	.	.
Query Sequence		A	A	G	.	.	.	.	.	R	V	I	R	L	T	S	E	N	G	S	H	T	T	F	R	Y	D	V	L	D	R	L	I	Q	E	T	G	F	D	G	R	T	Q	R	Y	H	H	D	L	T	G	K
Query Conservation					.	.	.	.	.
Alig confidence					.	.	.	.	.
Template Conservation
Template Sequence		N	E	Q	G	P	W	K	K	T	L	L	K	E	E	K	F	P	D	V	L	W	R	A	S	W	S	L	S	G	N	V	L	A	L	S	G	G	D	N	K	V	T	L	W	K	E	N	L	E	G	K
Template Known Secondary structure		S	S	S	S			B			B	S	S	S	S			S	S									T	T	T								S	S	S						B			S	S	S
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions