Job Description P16916 Confidence 23.30% Date Wed Jan 25 15:20:39 GMT 2012 Rank 11 Aligned Residues 243 % Identity 12% Template c2w8bB_ PDB info PDB header:protein transport/membrane protein Chain: B: PDB Molecule:protein tolb; PDBTitle: crystal structure of processed tolb in complex with pal Resolution 1.86 Å

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		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		V	A	H	R	H	T	G	R	P	E	I	R	Y	R	Y	D	S	D	G	R	V	T	E	.	Q	L	N	P	A	G	L	S	Y	T	Y	Q	Y	E	K	D	R	I	T	I	T	D	S	L	D	R	R	E	V	L	H	T	Q	G	E	A	G	L	K	R	V	V	K	K	E	H	A	D	G	S	V	T	Q	S	Q	F
Query Conservation																									.
Alig confidence																									.												.	.	.	.	.	.	.	.																			.	.
Template Conservation																																					.	.	.	.	.	.	.	.																			.	.
Template Sequence		L	R	V	S	D	Y	D	G	Y	N	Q	F	V	V	H	R	S	P	Q	P	L	M	S	P	A	W	S	P	D	G	S	K	L	A	Y	.	.	.	.	.	.	.	.	V	T	F	E	S	G	R	S	A	L	V	I	Q	T	L	A	N	G	.	.	A	V	R	Q	V	A	S	F	P	R	H	N	G	A	P	A	F
Template Known Secondary structure							T	T	S		S								S	S									T	T	S	S					.	.	.	.	.	.	.	.				T	T	S	S								T	T	T		.	.									S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.																			.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.									.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		426	.	.	.	430		.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.		.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure							.																																															.
Query SS confidence							.																																															.
Query Sequence		D	A	V	G	R	.	L	R	A	Q	T	D	A	A	G	R	T	T	E	Y	S	P	D	V	V	T	G	L	I	T	R	I	T	T	P	D	G	R	A	S	A	F	Y	Y	N	H	H	N	Q	L	T	S	.	A	T	G	P	D	G	L	E	L	R	R	E	Y	D	E	L	G	R	L	I	Q	E	T	A	P	D	G
Query Conservation							.																																															.
Alig confidence							.																																															.
Template Conservation
Template Sequence		S	P	D	G	S	K	L	A	F	A	L	S	K	T	G	S	L	N	L	Y	V	M	D	L	A	S	G	Q	I	R	Q	V	T	D	G	R	S	N	N	T	E	P	T	W	F	P	D	S	Q	N	L	A	F	T	S	D	Q	A	G	R	P	Q	V	Y	K	V	N	I	N	G	G	A	P	Q	R	I	T	W	E	G
Template Known Secondary structure			T	T	S	S								T	T	S	S								T	T	T										S	S									T	T	S	S								T	T	S	S								T	T	S									S	S
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.		.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580		.
Predicted Secondary structure																																																													.																			.
Query SS confidence																																																													.																			.
Query Sequence		D	I	T	R	Y	R	Y	D	N	P	H	S	D	L	P	C	A	T	E	D	A	T	G	S	R	K	T	M	T	W	S	R	Y	G	Q	L	L	S	F	T	D	C	S	G	Y	V	T	R	Y	D	H	D	R	F	G	Q	M	T	A	.	V	H	R	E	E	G	L	S	Q	Y	R	A	Y	D	S	R	G	Q	.	L
Query Conservation																																																													.																			.
Alig confidence																																																													.																			.
Template Conservation
Template Sequence		S	Q	N	Q	D	A	D	V	S	S	D	G	K	F	M	V	M	V	S	S	N	G	G	Q	Q	H	I	A	K	Q	D	L	A	T	G	G	V	Q	V	L	S	S	T	F	L	D	E	T	P	S	L	A	P	N	G	T	M	V	I	Y	S	S	S	Q	G	M	G	S	V	L	N	L	V	S	T	D	G	R	F	K
Template Known Secondary structure		S									T	T	S	S									T	T									T	T	T									S	S	S								T	T	S	S									T	T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
		582	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	V	K	D	T	Q	G	H	E	T	R	Y	E	Y	N	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	R	L	P	A	T	D	G	Q	V	K	F	P	A	W	S	P	Y
Template Known Secondary structure							S	S	S
Template Predicted Secondary structure
Template SS confidence
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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