Return to main results Retrieve Phyre Job Id

Job DescriptionP16916
Confidence23.25%DateWed Jan 25 15:20:39 GMT 2012
Rank12Aligned Residues39
% Identity28%Templatec1mjeA_
PDB info PDB header:gene regulation/antitumor protein/dnaChain: A: PDB Molecule:breast cancer 2; PDBTitle: structure of a brca2-dss1-ssdna complex
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1220.........1230....... ..1240.........1250........
Predicted Secondary structure 













..


















Query SS confidence 

















. .




















Query Sequence  QDPIGLKGGWNFYQYPLN. . PVTNTDPLGLEVFPRPFPLPI
Query Conservation   



  

 
 



 
..

   

 

     
     
Alig confidence 

















..




















Template Conservation   



      
 
  



 
 
  



      
   
Template Sequence  CAPLEAPDSLRLKISANSTRPARWHSRLGFFRDPRPFPLPL
Template Known Secondary structure 

SS


SS

GGG

SS

SBS
S

S


B
T
Template Predicted Secondary structure 





























Template SS confidence 








































   2686...2690.........2700.........2710.........2720......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions