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Job DescriptionP17445
Confidence100.00%DateThu Jan 5 11:36:12 GMT 2012
Rank23Aligned Residues476
% Identity37%Templatec3jz4C_
PDB info PDB header:oxidoreductaseChain: C: PDB Molecule:succinate-semialdehyde dehydrogenase [nadp+]; PDBTitle: crystal structure of e. coli nadp dependent enzyme
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  SRMAEQQLYIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWASMTAMERSRILRRAVDILRE
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Template Conservation           
 
               
 

  
          
  

  
  
   
       
   
   
  
  
Template Sequence  SNLFRQQALINGEWLDANNGEAIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWRALTAKERATILRNWFNLMME
Template Known Secondary structure  GGG


STT

TT


TTT


B
TS
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   5....10.........20.........30.........40.........50.........60.........70.........80....
 
   82.......90.........100.........110.........120.........130. ........140.........150.........160
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Query Sequence  RNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGSQIPLR. ETSFVYTRREPLGVVAGIGAWNYPIQIAL
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Template Sequence  HQDDLARLMTLEQGKPLAEA. KGEISYAASFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPAAMIT
Template Known Secondary structure  T


.GGG




SSTT



SSSTT
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   85....90.........100.... .....110.........120.........130.........140.........150.........160...
 
   161........170.........180.........190.........200.........210.........220.........230.........240
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Query Sequence  WKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTEHPGIAKVSFTGGVASGKKVMAN
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Template Sequence  RKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTGSAGAVGNELTSNPLVRKLSFTGSTEIGRQLMEQ
Template Known Secondary structure  T


TTST

TTT

B

TTS
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   164.....170.........180.........190.........200.........210.........220.........230.........240...
 
   241........250.........260.........270.........280.........290.........300.........310.........320
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Query Sequence  SAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANFFSSGQVCTNGTRVFVPAKCKAAFEQKILARVERIRAGDVFD
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Template Conservation   .         



    

  


   

  

       

 
 
   
 
   
 
 

  
         
    
Template Sequence  C. AKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAMSKLHIGDGLD
Template Known Secondary structure  .TTTT





TTS
GGGG
STTSGGGTT

BS
TTS
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   244 .....250.........260.........270.........280.........290.........300.........310.........320..
 
   321........330.........340.........350.........360.........370.........380.........390.........400
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Query Sequence  PQTNFGPLVSFPHRDNVLRYIAKGKEEGARVLCGGDVLKGDGFDNGAWVAPTVFTDCSDDMTIVREEIFGPVMSILTYES
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Template Sequence  NGVTIGPLIDEKAVAKVEEHIADALEKGARVVCGGKAHERG. . . . GNFFQPTILVDVPANAKVSKEETFGPLAPLFRFKD
Template Known Secondary structure  TT

B


SSTT


SB
TT
....TT
B

S

TTSS


SS

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   323......330.........340.........350.........360... ......370.........380.........390........
 
   401........410.........420.........430.........440.........450.........460.........470.........480
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Query Sequence  EDEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSIQ
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Template Sequence  EADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVAPFGGIKASGLGREGSKYGIEDYLEIKYMC
Template Known Secondary structure 
SS

S





SS
S



SSS
B

SGGGS
BSTT
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   399400.........410.........420.........430.........440.........450.........460.........470........
 
   481..
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Query Sequence  VEM
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Template Conservation     
Template Sequence  IGL
Template Known Secondary structure 
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   479480.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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