Job Description P17445 Confidence 100.00% Date Thu Jan 5 11:36:12 GMT 2012 Rank 22 Aligned Residues 476 % Identity 32% Template c1t90B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis Resolution 2.50 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	M	A	E	Q	Q	L	Y	I	H	G	G	Y	T	S	A	T	S	G	R	T	F	E	T	I	N	P	A	N	G	N	V	L	A	T	V	Q	A	A	G	R	E	D	V	D	R	A	V	K	S	A	Q	Q	G	Q	K	I	W	A	S	M	T	A	M	E	R	S	R	I	L	R	R	A	V	D	I	L	R	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	I	R	K	L	K	N	Y	I	N	G	E	W	V	E	S	K	T	D	Q	Y	E	D	V	V	N	P	A	T	K	E	V	L	C	Q	V	P	I	S	T	K	E	D	I	D	Y	A	A	Q	T	A	A	E	A	F	K	T	W	S	K	V	A	V	P	R	R	A	R	I	L	F	N	F	Q	Q	L	L	S	Q	H
Template Known Secondary structure					B						T	T						S		S								T	T	T	T																													T	T	S																			T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.		.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		N	D	E	L	A	K	L	E	T	L	D	T	G	K	A	Y	S	E	T	S	T	V	D	I	V	T	G	A	D	V	L	E	Y	Y	A	G	L	I	P	A	L	E	G	S	Q	I	P	L	R	.	E	T	S	F	V	Y	T	R	R	E	P	L	G	V	V	A	G	I	G	A	W	N	Y	P	I	Q	I	A	L	W
Query Conservation																																																			.
Alig confidence																					.																														.
Template Conservation																					.
Template Sequence		K	E	E	L	A	H	L	I	T	I	E	N	G	K	N	T	K	E	A	.	L	G	E	V	G	R	G	I	E	N	V	E	F	A	A	G	A	P	S	L	M	M	G	D	S	L	A	S	I	A	T	D	V	E	A	A	N	Y	R	Y	P	I	G	V	V	G	G	I	A	P	F	N	F	P	M	M	V	P	C	W
Template Known Secondary structure																					.															T	T															T	T											S								S	S		T	T
Template Predicted Secondary structure																					.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	S	A	P	A	L	A	A	G	N	A	M	I	F	K	P	S	E	V	T	P	L	T	A	L	K	L	A	E	I	Y	S	E	A	G	L	P	D	G	V	F	N	V	L	P	G	V	G	A	E	T	G	Q	Y	L	T	E	H	P	G	I	A	K	V	S	F	T	G	G	V	A	S	G	K	K	V	M	A	N	S
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence		M	F	P	M	A	I	A	L	G	N	T	F	I	L	K	P	S	E	R	T	P	L	L	T	E	K	L	V	E	L	F	E	K	A	G	L	P	K	G	V	F	N	V	V	Y	G	.	A	H	D	V	V	N	G	I	L	E	H	P	E	I	K	A	I	S	F	V	G	S	K	P	V	G	E	Y	V	Y	K	K	G
Template Known Secondary structure									T	T									T	T	S														T	T			T	T	S							.	S											T	T								S
Template Predicted Secondary structure																																																.
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	S	S	L	K	E	V	T	M	E	L	G	G	K	S	P	L	I	V	F	D	D	A	D	L	D	L	A	A	D	I	A	M	M	A	N	F	F	S	S	G	Q	V	C	T	N	G	T	R	V	F	V	P	A	K	C	K	A	A	F	E	Q	K	I	L	A	R	V	E	R	I	R	A	G	D	V	F	D	P
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	S	E	N	L	K	R	V	Q	S	L	T	G	A	K	N	H	T	I	V	L	N	D	A	N	L	E	D	T	V	T	N	I	V	G	A	A	F	G	S	A	G	E	R	C	M	A	C	A	V	V	T	V	E	E	G	I	A	D	E	F	M	A	K	L	Q	E	K	V	A	D	I	K	I	G	N	G	L	D	D
Template Known Secondary structure		.			T	T																	T	T																G	G	G	G			T	T									T	T	T														T			B	S		T	T	S	T
Template Predicted Secondary structure		.
Template SS confidence
			241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	N	F	G	P	L	V	S	F	P	H	R	D	N	V	L	R	Y	I	A	K	G	K	E	E	G	A	R	V	L	C	G	G	D	V	L	K	G	D	G	F	D	N	G	A	W	V	A	P	T	V	F	T	D	C	S	D	D	M	T	I	V	R	E	E	I	F	G	P	V	M	S	I	L	T	Y	E	S	E
Query Conservation
Alig confidence																																										.	.	.
Template Conservation																																										.	.	.
Template Sequence		G	V	F	L	G	P	V	I	R	E	D	N	K	K	R	T	L	S	Y	I	E	K	G	L	E	E	G	A	R	L	V	C	D	G	R	E	N	V	S	D	.	.	.	D	G	Y	F	V	G	P	T	I	F	D	N	V	T	T	E	M	T	I	W	K	D	E	I	F	A	P	V	L	S	V	I	R	V	K	N	L
Template Known Secondary structure		T			B				S	S																		T							T	T	S	S			S	.	.	.	S	S	S									S			T	T	S					S				S	S								S	S
Template Predicted Secondary structure																																										.	.	.
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.				360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.	.	.	.	460	.	.			.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.															.	.
Query SS confidence																																																	.															.	.
Query Sequence		D	E	V	I	R	R	A	N	D	T	D	Y	G	L	A	A	G	I	V	T	A	D	L	N	R	A	H	R	V	I	H	Q	L	E	A	G	I	C	W	I	N	T	W	G	E	S	P	.	A	E	M	P	V	G	G	Y	K	H	S	G	I	G	.	.	R	E	N	G	V	M	T	L	Q	S	Y	T	Q	V	K	S
Query Conservation																																																	.															.	.
Alig confidence																																																	.															.	.
Template Conservation
Template Sequence		K	E	A	I	E	I	A	N	K	S	E	F	A	N	G	A	C	L	F	T	S	N	S	N	A	I	R	Y	F	R	E	N	I	D	A	G	M	L	G	I	N	L	G	V	P	A	P	M	A	F	F	P	F	S	G	W	K	S	S	F	F	G	T	L	H	A	N	G	K	D	S	V	D	F	Y	T	R	K	K	V
Template Known Secondary structure											S	S			S																						S					S		S						T	T	S		B					T	T			S	S	S		B	S								T
Template Predicted Secondary structure
Template SS confidence
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.
		479	480	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	Q	V	E	M	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	A	R	Y	P
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		477	.	.	480	.	.