Phyre 2 alignment of P25549 with c3e2dB

Job Description P25549
Confidence 98.83% Date Thu Jan 5 11:42:06 GMT 2012

Rank 34 Aligned Residues 258

% Identity 17% Template c3e2dB_

PDB info PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase

Resolution 1.40 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.							.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.				.	.	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																							.	.	.	.	.	.																			.	.	.												.	.
Query SS confidence																							.	.	.	.	.	.																			.	.	.												.	.
Query Sequence	G	K	K	P	N	V	V	V	F	L	L	D	D	V	G	W	M	D	V	G	F	N	.	.	.	.	.	.	G	G	G	V	A	V	G	N	P	T	P	D	I	D	A	V	A	S	.	.	.	Q	G	L	I	L	T	S	A	Y	S	Q	.	.	P	S	S	S	P	T	R	A	T	I	L	T	G	Q	Y	S	I	H
Query Conservation																							.	.	.	.	.	.																			.	.	.												.	.
Alig confidence																							.	.	.	.	.	.																			.	.	.												.	.																.	.	.
Template Conservation																																																																														.	.	.
Template Sequence	A	E	I	K	N	V	I	L	M	I	G	D	G	M	G	P	Q	Q	V	G	L	L	E	T	Y	A	N	Q	A	P	N	S	I	Y	K	G	N	K	T	A	I	Y	Q	L	A	Q	E	G	V	I	G	S	S	L	T	H	P	E	D	A	I	V	V	D	S	A	C	S	A	T	M	L	A	T	G	I	Y	.	.	.
Template Known Secondary structure																														T	T		T	T	T	T												S										T	T	S	S	S													S	S		.	.	.
Template Predicted Secondary structure																																																																														.	.	.
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.

	152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.																		.	.	.	.	.	.	.	210	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Query Sequence	H	G	I	L	M	P	P	M	Y	G	Q	P	G	G	L	Q	G	L	T	T	L	P	Q	L	L	H	D	Q	G	Y	V	T	Q	A	I	G	K	W	H	M	G	E	N	K	E	S	Q	P	Q	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	D	D	F	R	G	F	N	.	.	.
Query Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Alig confidence	.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation	.	.	.
Template Sequence	.	.	.	S	S	S	E	V	I	G	I	D	S	Q	G	N	H	V	E	T	V	L	E	K	A	K	K	A	G	K	A	T	G	L	V	S	D	T	R	L	T	H	A	T	P	A	S	F	A	A	H	Q	P	H	R	S	L	E	N	Q	I	A	S	D	M	L	A	T	G	A	D	V	M	L	S	G	G	L	R	H
Template Known Secondary structure	.	.	.			T	T		B	S	B		T	T	S		B											T	T											T	T	S					T	T	T			B	S		T	T													T		S							G	G	G
Template Predicted Secondary structure	.	.	.
Template SS confidence
				78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.

																												212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	S	D	M	Y	T	E	W	R	D	V	H	V	N	P	E	V	A	L	S	P	D	R	S	E	Y	I	K	Q	L	P	F	S	K	D	D	V	H	A	V	R	G	G	E	Q	Q	A	I	A	D	I	T
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	W	I	P	K	S	T	N	D	K	G	E	T	Y	K	Q	L	E	K	L	T	Q	G	D	V	Y	L	K	S	K	R	K	D	D	R	N	L	L	T	E	A	E	K	D	G	Y	Q	L	A	F	N	R	N	M	L	D	D	A	K	G	D	K	L	L	G	L	F	A	Y	S	G	M	D	D	G	I	A	Y	S	N	K
Template Known Secondary structure	S	S		G	G	G	G	G	T	S										T	T	T		S							S	S											T	T					S	S									S	S							S	S	S	S
Template Predicted Secondary structure
Template SS confidence
	155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

	265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	K	Y	M	E	D	L	D	Q	R	W	M	D	Y	G	V	K	F	L	D	K	M	A	K	S	D	K	P	F	F	L	Y	Y	G	T	R	G	C	H	F	D	N	Y	P	N	A	K	Y	A	G	S	S	P	A	R	T	S	Y	G	D	C	M	V	E	M	N	D	V	F	A	N	L	Y	K	T	L	E	K	N	G
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.
Template Sequence	K	K	S	G	E	R	T	Q	P	S	L	K	E	M	T	Q	K	A	L	N	I	L	S	K	D	E	D	G	F	F	L	M	V	E	G	G	Q	I	.	.	.	.	.	.	.	.	D	W	A	G	H	S	N	D	A	G	T	M	L	H	E	L	L	K	F	D	E	A	I	Q	T	V	Y	E	W	A	K	D	R	E
Template Known Secondary structure				T				S															T	T		T	T										S		.	.	.	.	.	.	.	.						T	T																								T	T		S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.
Template SS confidence
	235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.									.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.

	345	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	L	D	N	T	L	I	V	F	T	S	D	N
Query Conservation
Alig confidence	.	.	.
Template Conservation	.	.	.
Template Sequence	.	.	.	D	T	I	V	I	V	T	A	D	H
Template Known Secondary structure	.	.	.	S
Template Predicted Secondary structure	.	.	.
Template SS confidence
				307	.	.	310	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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