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Job DescriptionP25549
Confidence100.00%DateThu Jan 5 11:42:06 GMT 2012
Rank8Aligned Residues379
% Identity22%Templatec3b5qB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:putative sulfatase yidj; PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   84.....90.........100.........110.........120.........130... ......140.........150.........160..
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Query Sequence  KKPNVVVFLLDDVGWMDVGFNGGGVAVGNPTPDIDAVASQGLILTSAYSQ. PSSSPTRATILTGQYSIHHGILMPPMYGQ
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Template Sequence  EKPNFLIIQCDHLTQRVVGAYGQTQG. . . CTLPIDEVASRGVIFSNAYVGCPLSQPSRAALWSGXXPHQTNVRSNSSEPV
Template Known Secondary structure 


TT

TTTSGGGSS
SS...S
SBS
BB
S
SSTS
T

SS

TTT
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   14.....20.........30......... 40.........50.........60.........70.........80.........90
 
   163 ......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  P. GGLQGLTTLPQLLHDQGYVTQAIGKWHMGENKESQPQNVGFDDFRGFNSVSDMYTEWRDVHVNPEVALSPDRSEYIKQ
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Template Sequence  NTRLPENVPTLGSLFSESGYEAVHFGKTHDXGSL. . . . . . RGFKHKEPVAKPFTDPEFPVNND. . . . . . . . . . . . . . . . .
Template Known Secondary structure  S



TTS

TT




TTTT......TTS








SSS


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   91........100.........110.........120.... .....130.........140.......
 
   242.......250.........260.........270.........280.........290.........300.........310..
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Query Sequence  LPFSKDDVHAVRGGEQQAIADITPKYMEDLDQRWMDYGVKFLDKMAKSDKPFFLYYGTRGCHFDNYPNAKY. . . . . . . . .
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . SFLDVGTCEDAVAYLS. . NPPKEPFICIADFQNPHNICGFIGENAGVHTDRPI
Template Known Secondary structure  .............................S

SSS
TTTTT
SS





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   148.150.........160... ......170.........180.........190........
 
   313......320.........330.........340.........350.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AGSSPARTSYGDCMVEMNDVFANLYKTLEKNGQLDNTLI
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Template Sequence  SGPLPELPDNFDVEDWSNIPTPVQYICCSHRRXTQAAHWNEENYRHYIAAFQHYTKXVSKQVDSVLKALYSTPAGRNTIV
Template Known Secondary structure  SS





TT
S
S
GGGS
T
TT

TTSTTGGG
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   199200.........210.........220.........230.........240.........250.........260.........270........
 
   352.......360.........370.........380.........390.........400.. .......410.........420........
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Query Sequence  VFTSDNGPEAEVPPHGRTPFRGAKGSTWEGGVRVPTFVYWKGMIQPRKSDG. . . IVDLADLFPTALDLAGHPGAKVANLV
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Template Sequence  VIXADHGDGX. . . . . ASHRXVTKHISFYDEXTNVPFIFAGPGIKQQKKPVDHLLTQPTLDLLPTLCDLAGIAVPAE. . . .
Template Known Secondary structure  S



T.....TGGG

S
SS


B

STT



SS
B
SS
B
T



TT....
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   279280........ .290.........300.........310.........320.........330.........340.........
 
   429430.........440.........450.........460... ......470.........480.........490.........500.
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Query Sequence  PKTTFIDGVDQTSFFLGTNGQSNRKAEHYFLNGKL. . . . . . . AAVRMDEFKYHVLIQQPYAYTQSGYQGGFTGTVMQTAG
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Template Sequence  . . . . . KAGISLAPTLRGEKQKKSHPYVVSEWHSEYEYVTTPGRXVRGPRYKYTHYLEG. . . . . . . . . . . . . . . . . . . . NG
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TS





SS

SSSS
B


SSTGG....................G
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   350.........360.........370.........380.........390.........400.. ..
 
   502.......510......... 520.........530.........540.........550.
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Query Sequence  SSVFNLYTDPQESDSIGV. . RHIPMGVPLQTEMHAYMEILKKYPPRAQIKSD
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Template Sequence  EELYDXKKDPGERKNLAKDPKYSKILAEHRALLDDYITRSKDDYRSLKVDAD
Template Known Secondary structure  TTT
TT




TT
GGGT

GGG


B

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   405....410.........420.........430.........440.........450......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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