Job Description P25549 Confidence 100.00% Date Thu Jan 5 11:42:06 GMT 2012 Rank 17 Aligned Residues 323 % Identity 16% Template c2i09A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:phosphopentomutase; PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans Resolution 2.00 Å

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		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.				100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.																				.	.	.	.	.	.	.	.	130	.	.	.		.	.	.	.	.	.
Predicted Secondary structure																			.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query SS confidence																			.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query Sequence		G	K	K	P	N	V	V	V	F	L	L	D	D	V	G	W	M	.	.	.	D	V	G	F	N	G	G	G	V	A	V	G	N	P	T	P	D	I	D	A	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	G	L	I	L	T	S	A	Y	S	Q	.	P	S	S	S	P	T
Query Conservation																			.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Alig confidence																			.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation
Template Sequence		S	T	F	N	R	I	H	L	V	V	L	D	S	V	G	I	G	A	A	P	D	A	N	N	F	S	N	A	G	V	P	D	G	A	S	D	T	L	G	H	I	S	K	T	V	G	L	N	V	P	N	M	A	K	I	G	L	G	N	I	P	R	D	T	P	L	K	T	V	P	A	E	N	H	P	T	G	Y	V	T
Template Known Secondary structure					S								T	T				S	B		T	T	G	G	G	S			T	T			G	G	G											T											T	G	G	G	S			S	S			T	T					S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.							.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.															.
Predicted Secondary structure																															.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	T	I	L	T	G	Q	Y	S	I	H	H	G	I	L	M	P	P	M	Y	G	Q	P	G	G	L	Q	G	.	.	.	.	.	.	L	T	T	L	P	Q	L	L	H	D	Q	G	Y	V	T	Q	A	I	G	K	W	H	M	G	E	N	K	E	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P
Query Conservation																															.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	L	E	E	V	S	L	G	K	D	T	M	T	G	H	W	E	I	M	G	L	N	I	T	E	P	F	D	T	F	W	N	G	F	P	E	E	I	I	S	K	I	E	K	F	S	G	R	K	V	I	R	E	A	N	K	P	Y	S	G	T	G	E	L	I	I	Y	T	S	A	D	P	V	L	Q	I	A	A	H	E
Template Known Secondary structure							S	S			S									T	T				S	S						T	T															S			B		G	G	G		S	B							B						S	S	S								T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.													.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	N	V	G	F	D	D	F	R	G	F	N	S	V	S	D	M	Y	T	E	W	R	D	V	H	V	N	P	E	V	A	L	S	P	D	R	S	E	Y	I	K	Q	L	P	F	S	K	D	D	V	H	A	.	.	.	.	.	.	.	.	.	.	.	.	V	R	G	G	E	Q	Q	A	I	A	D	I	T	P	K	Y
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	V	I	P	L	D	E	L	Y	R	I	C	E	Y	A	R	S	I	T	L	E	R	P	A	L	L	G	R	I	I	A	R	P	T	A	N	R	H	D	Y	A	L	S	P	F	A	P	T	V	L	N	K	L	A	D	A	G	V	S	T	Y	A	V	G	K	I	N	D	I	F	N	G	S	G	I	T	N	D	M	G
Template Known Secondary structure		T	T	S																	S	S	T	T	S			S																		S	S										T	T							T	T					T	T	T	T	T		S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	E	D	L	D	Q	R	W	M	D	Y	G	V	K	F	L	D	K	M	A	K	S	D	K	P	F	F	L	Y	Y	G	T	R	G	C	H	F	D	N	Y	P	N	A	K	Y	A	G	S	S	P	A	R	T	S	Y	G	D	C	M	V	E	M	N	D	V	F	A	N	L	Y	K	T	L	E	K	N	G	Q	L	D
Query Conservation
Alig confidence																			.	.																					.	.	.	.	.	.	.																													.	.	.	.	.
Template Conservation																			.	.																					.	.	.	.	.	.	.																													.	.	.	.	.
Template Sequence		H	N	K	S	N	S	H	G	V	D	T	L	I	K	T	M	G	.	.	L	S	A	F	T	K	G	F	S	F	T	N	L	V	D	F	D	A	L	Y	.	.	.	.	.	.	.	G	H	R	R	N	A	H	G	Y	R	D	C	L	H	E	F	D	E	R	L	P	E	I	I	A	A	M	K	.	.	.	.	.	V
Template Known Secondary structure				S	S														.	.		S	S			S														T	.	.	.	.	.	.	.	T	T	T	T																						T			.	.	.	.	.	T
Template Predicted Secondary structure																			.	.																					.	.	.	.	.	.	.																													.	.	.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.								.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.						330
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	L	I	V	F	T	S	D	N	G	P	E	A	E	V	P	P	H	G	R	T	P	F	R	G	A	K	G	S	T	W	E	G	G	V	R	V	P	T	F	V	Y	W	K	G	M	I	Q	P	R	K	S	D	G	I	V	D	L	A	D	L	F	P	T	A	L	D	L	A	G	H	P	G	A	K	V	A	N	L
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.																.																													.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.																.																													.	.	.	.	.
Template Sequence		D	D	L	L	L	I	T	A	D	H	G	N	D	P	T	Y	A	G	T	.	.	.	.	.	.	.	.	.	.	.	.	D	H	T	R	E	Y	V	P	L	L	A	Y	S	P	S	.	F	T	G	N	G	V	L	P	V	G	H	Y	A	D	I	S	A	T	I	A	D	N	F	G	V	D	T	A	.	.	.	.	.
Template Known Secondary structure		T								S	S	B			T	T	S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	S		B		B									T	T	.		S										T	T										T	T					.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.																.																													.	.	.	.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.													350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	P	K	T	T	F	I	D	G	V	D	Q	T	S	F	F
Query Conservation
Alig confidence		.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	M	I	G	E	S	F	L	D	K	L
Template Known Secondary structure		.	.	.	.	.	.	S	S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								393	.	.	.	.	.	.	400	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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