Job Description P0AFX9 Confidence 99.75% Date Thu Jan 5 11:27:32 GMT 2012 Rank 4 Aligned Residues 172 % Identity 10% Template c2w7qB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:outer-membrane lipoprotein carrier protein; PDBTitle: structure of pseudomonas aeruginosa lola Resolution 1.88 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure															.										.	.	.	.
Query SS confidence															.										.	.	.	.
Query Sequence		A	L	L	Q	Q	M	N	L	A	S	Q	S	L	.	N	Y	E	L	S	F	I	S	I	.	.	.	.	N	K	Q	G	V	E	S	L	R	Y	R	H	A	R	L	D	N	R	P	L	A	Q	L	L	Q	M	D	G	P	R	R	E	V	V	Q	R	G	N	E	I	S	Y	F	E	P	G	L	E	P	F	T	L	N
Query Conservation															.										.	.	.	.
Alig confidence															.										.	.	.	.																					.					.
Template Conservation																																																	.					.
Template Sequence		A	A	V	Q	R	L	T	G	L	L	N	K	A	Q	T	L	T	A	R	F	S	Q	L	T	L	D	G	S	G	T	R	L	Q	E	T	A	G	Q	L	S	L	K	R	P	G	L	F	.	R	W	H	T	.	D	A	P	N	E	Q	L	L	I	S	N	E	K	V	W	L	Y	D	P	D	L	E	Q	V	T	I	Q
Template Known Secondary structure													T		S													T	T	S														T	T	T			.					.		T	T	S															T	T	T	T
Template Predicted Secondary structure																																																	.					.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		104	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		G	D	Y	.	.	I	V	D	S	L	P	S	L	I	Y	T	D	F	K	R	L	S	P	Y	Y	D	F	I	S	V	G	R	T	R	I	A	D	R	L	C	E	V	I	R	V	V	A	R	D	G	T	R	Y	S	Y	I	V	W	M	D	T	E	S	K	L	P	M	R	V	D	L	L	D	R	D	G	E	T	L	E
Query Conservation					.	.
Alig confidence					.	.																											.	.	.	.	.																.	.	.	.
Template Conservation																																	.	.	.	.	.																.	.	.	.
Template Sequence		K	L	D	Q	R	L	T	Q	T	P	A	L	L	L	S	G	D	I	S	K	I	S	E	S	F	A	I	T	Y	K	E	.	.	.	.	.	G	G	N	V	V	D	F	V	L	K	P	K	L	F	D	.	.	.	.	T	L	R	L	S	F	R	S	G	K	V	N	D	M	Q	M	I	D	G	V	G	Q	R	T	N
Template Known Secondary structure							T	T	T		G	G	G	G	G	G	S						T	T	T								.	.	.	.	.		T	T													.	.	.	.								T	T										T	T
Template Predicted Secondary structure																																	.	.	.	.	.																.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130						.	.	.	.	.	.	.	.	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	R	V	I	A	F	N	V	N	Q	D	I	S	S	S	M	Q	T	L	A	K	A	N	L	P	P	L	L	S	V
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	I	L	F	F	D	V	K	M	N	E	A	L	D	A	K	Q	F	T	F	D	V	P	P	G	V	D	V	I	Q	E
Template Known Secondary structure		.									S					G	G	G	G						T	T
Template Predicted Secondary structure		.
Template SS confidence
			175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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