Job Description Q93K97 Confidence 99.33% Date Thu Jan 5 12:37:43 GMT 2012 Rank 73 Aligned Residues 166 % Identity 16% Template c2pnyA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 Resolution 1.81 Å

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		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.										.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.																																								.
Query SS confidence																							.	.	.	.	.	.	.	.	.																																								.
Query Sequence		R	F	R	H	R	L	F	N	G	Q	M	S	H	E	V	R	R	E	I	F	E	.	.	.	.	.	.	.	.	.	R	G	H	A	A	V	L	L	P	F	D	P	V	R	D	E	V	V	L	I	E	Q	I	R	I	A	A	Y	D	T	S	E	T	P	W	L	L	E	M	.	V	A	G	M	I	E	E	G	E	S
Query Conservation																							.	.	.	.	.	.	.	.	.																																								.
Alig confidence																							.	.	.	.	.	.	.	.	.														.						.	.										.	.								.
Template Conservation																																													.						.	.										.	.
Template Sequence		M	L	I	V	V	D	E	N	D	K	V	I	G	A	D	T	K	R	N	C	H	L	N	E	N	I	E	K	G	L	L	H	R	A	F	S	V	V	L	F	N	T	K	.	N	R	I	L	I	.	.	Q	Q	R	S	D	T	K	V	T	.	.	F	P	G	Y	F	T	D	S	C	S	S	H	P	L	Y	N	P	A
Template Known Secondary structure								T	T													T	B					T	T	T													T	T	.						.	.					T	T		S	S	.	.	S	T	T		B			S						B	S	S
Template Predicted Secondary structure																																													.						.	.										.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.		.	.	.	.	.			.	.	70	.	.	.	.	.	.			.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
											105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.						.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	V	E	D	V	A	R	R	E	A	I	E	E	A	G	L	I	V	K	.	.	.	.	.	R	T	K	P	V	L	S	F	L	A	S	P	G	G	T	S	E	R	S	S	I	M	V	G	E	V	D	A	T	T	A	S	G	I	H	G	L	A	D	E	N	E	D	I	R	V	H	V
Query Conservation		.	.	.	.	.	.	.	.	.																			.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																			.	.	.	.	.																															.
Template Conservation																																																																.
Template Sequence		E	L	E	E	K	D	A	I	G	V	R	R	A	A	Q	R	R	L	Q	A	E	L	G	I	P	G	E	Q	I	S	P	E	D	I	V	F	M	T	I	Y	H	H	K	A	K	S	D	R	I	W	G	E	H	E	I	C	Y	L	L	L	V	R	.	K	N	V	T	L	N	P	D	P	S	E	T	K	S	I	L	Y
Template Known Secondary structure						G	G	G																			T	T	T			G	G	G	S												S	S	S	S	B													.									T	T	T
Template Predicted Secondary structure																																																																.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.						.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.
Query SS confidence														.	.	.	.	.
Query Sequence		V	S	R	E	Q	A	Y	Q	W	V	E	E	.	.	.	.	.	G	K	I	D	N	A	A	S	V	I	A	L	Q	W	L	Q	L	H	H	Q	A	L	K	N
Query Conservation														.	.	.	.	.
Alig confidence														.	.	.	.	.
Template Conservation
Template Sequence		L	S	Q	E	E	L	W	E	L	L	E	R	E	A	R	G	E	V	K	V	T	P	W	L	R	T	I	A	E	R	F	L	Y	R	W	W	P	H	L	D	D
Template Known Secondary structure																	T	S	S		B											T					G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions