Job Description Q93K97 Confidence 99.03% Date Thu Jan 5 12:37:43 GMT 2012 Rank 79 Aligned Residues 102 % Identity 9% Template c2j8qB_ PDB info PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. Resolution 2.3 Å

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		59	60	.	.	.	.	.	.	.	.	.	70	.			.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure															.	.																																																		.	.
Query SS confidence															.	.																																																		.	.
Query Sequence		A	A	V	L	L	P	F	D	P	V	R	D	E	.	.	V	V	L	I	E	Q	I	R	I	A	A	Y	D	T	S	E	T	P	W	L	L	E	M	V	A	G	M	I	E	E	G	E	S	V	E	D	V	A	R	R	E	A	I	E	E	A	G	L	I	.	.	V	K	R	T	K	P	V	L	S	F	L	A	S	P
Query Conservation															.	.																																																		.	.
Alig confidence															.	.							.	.	.	.	.	.	.	.	.	.																																		.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.
Template Sequence		T	V	E	G	V	L	I	V	H	E	H	R	L	P	H	V	L	L	L	Q	L	.	.	.	.	.	.	.	.	.	.	G	T	T	F	F	K	L	P	G	G	E	L	N	P	G	E	D	E	V	E	G	L	K	R	L	M	T	E	I	L	G	R	Q	D	D	W	V	I	D	D	C	I	G	N	W	W	R	P	N
Template Known Secondary structure											S	S	S										.	.	.	.	.	.	.	.	.	.	S	T	T					S						T	T																																		S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.											100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		135	.	.	.	.														140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	G	T	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	S	I	M	V	G	E	V	D	A	T	T	A	S	G	I	H	G	L	A	D	E	N	E	D	I	R	V	H	V	V	S	R	E	Q	A
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.
Template Sequence		F	E	P	P	Q	Y	P	Y	I	P	A	H	I	T	K	P	K	E	H	K	K	L	F	L	V	Q	L	Q	E	K	A	L	F	A	V	.	.	.	.	.	.	P	K	N	Y	K	L	V	A	A	P	L	F	E	L
Template Known Secondary structure		S	S	S			B	S	S			T	T		S			S												S	S						.	.	.	.	.	.		T	T
Template Predicted Secondary structure																																					.	.	.	.	.	.
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.							.	.	190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions