Job Description P37672 Confidence 100.00% Date Thu Jan 5 11:56:44 GMT 2012 Rank 2 Aligned Residues 328 % Identity 24% Template c1vbiA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:type 2 malate/lactate dehydrogenase; PDBTitle: crystal structure of type 2 malate/lactate dehydrogenase from thermus2 thermophilus hb8 Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	V	T	F	E	Q	L	K	A	A	F	N	R	V	L	I	S	R	G	V	D	S	E	T	A	D	A	C	A	E	M	F	A	R	T	T	E	S	G	V	Y	S	H	G	V	N	R	F	P	R	F	I	Q	Q	L	E	N	G	D	I	I	P	D	A	Q	P	K	R	I	T	S	L	G	A	I	E	Q	W	D
Query Conservation
Alig confidence																																																																							.
Template Conservation																																																																							.
Template Sequence		M	R	W	R	A	D	F	L	S	A	W	A	E	A	L	L	R	K	A	G	A	D	E	P	S	A	K	A	V	A	W	A	L	V	E	A	D	L	R	G	V	G	S	H	G	L	L	R	L	P	V	Y	V	R	R	L	E	A	G	L	V	N	P	S	P	T	L	P	L	.	E	E	R	G	P	V	A	L	L	D
Template Known Secondary structure																				T	T																			T	T		G	G	G	S	G	G	G										T	T		S	B	S	S						.				T	T
Template Predicted Secondary structure																																																																							.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.		70	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	R	S	I	G	N	L	T	A	K	K	M	M	D	R	A	I	E	L	A	A	D	H	G	I	G	L	V	A	L	R	N	A	N	H	W	M	R	G	G	S	Y	G	W	Q	A	A	E	K	G	Y	I	G	I	C	W	T	N	S	I	A	V	M	P	P	W	G	A	K	E	C	R	I	G	T	N	P	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	H	G	F	G	P	R	V	A	L	K	A	V	E	A	A	Q	S	L	A	R	R	H	G	L	G	A	V	G	V	R	R	S	T	H	F	G	M	A	G	L	Y	A	E	K	L	A	R	E	G	F	V	A	W	V	T	T	N	A	E	P	D	V	V	P	F	G	G	R	E	K	A	L	G	T	N	P	L	A
Template Known Secondary structure			T	T	B																					S																									T	T										S			B			T	T		S	S			B
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		V	A	I	P	S	T	P	.	I	T	M	V	D	M	S	M	S	M	F	S	Y	G	M	L	E	V	N	R	L	A	G	R	Q	L	P	V	D	G	G	F	D	D	E	G	N	L	T	K	E	P	G	V	I	E	K	N	R	R	I	L	P	M	G	Y	W	K	G	S	G	M	S	I	V	L	D	M	I	A	T	L
Query Conservation									.
Alig confidence									.																																															.	.	.
Template Conservation																																																								.	.	.
Template Sequence		F	A	A	P	A	P	Q	G	I	L	V	A	D	L	A	T	S	E	S	A	M	G	K	V	F	L	A	R	E	K	G	E	R	I	P	P	S	W	G	V	D	R	E	G	S	P	T	D	D	P	H	R	V	Y	.	.	.	A	L	R	P	L	G	G	P	K	G	Y	A	L	A	L	L	V	E	V	L	S	G	V
Template Known Secondary structure							T	T									S	B	S	S												T					T	T	S				T	T	S		B		S		G	G	G			.	.	.				B	T	T	T															T	T
Template Predicted Secondary structure																																																								.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.				250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure												.	.	.
Query SS confidence												.	.	.
Query Sequence		L	S	D	G	A	S	V	A	E	V	.	.	.	T	Q	D	N	S	D	E	Y	G	I	S	Q	I	F	I	A	I	E	V	D	K	L	I	D	G	P	T	R	D	A	K	L	Q	R	I	M	D	Y	V	T	S	A	E	R	A	D	E	N	Q	A	I	R	L	P	G	H	E	F	T	T	L	L	A	E	N	R	R
Query Conservation												.	.	.
Alig confidence												.	.	.
Template Conservation
Template Sequence		L	T	G	A	G	V	A	H	G	I	G	R	M	Y	D	E	W	D	R	P	Q	D	V	G	H	F	L	L	A	L	D	P	G	R	F	V	G	K	E	A	F	L	E	R	M	G	A	L	W	Q	A	L	K	A	T	P	P	A	P	G	H	E	E	V	F	L	P	G	E	L	E	A	R	R	R	E	R	A	L	A
Template Known Secondary structure		T	T	T	S			G	G	G	S			T	T	T			S	S													G	G	G	T	T																		T	S				T	T		S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	I	T	V	D	D	S	V	W	A	K	I	Q	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	G	M	A	L	P	E	R	V	V	A	E	L	K	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions