Job Description P37672 Confidence 100.00% Date Thu Jan 5 11:56:44 GMT 2012 Rank 9 Aligned Residues 320 % Identity 28% Template c1v9nA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:malate dehydrogenase; PDBTitle: structure of malate dehydrogenase from pyrococcus horikoshii ot3 Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	V	T	F	E	Q	L	K	A	A	F	N	R	V	L	I	S	R	G	V	D	S	E	T	A	D	A	C	A	E	M	F	A	R	T	T	E	S	G	V	Y	S	H	G	V	N	R	F	P	R	F	I	Q	Q	L	E	N	G	D	I	I	P	D	A	Q	P	K	R	I	T	S	L	G	A	I	E	Q	W	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	R	V	P	K	D	R	L	F	S	F	I	V	R	V	L	T	K	L	G	V	P	E	E	D	A	K	I	V	A	D	N	L	V	X	A	D	L	R	G	V	E	S	H	G	V	Q	R	L	K	R	Y	V	D	G	I	I	S	G	G	V	N	L	H	P	K	I	R	V	I	R	E	G	P	S	Y	A	L	I	D
Template Known Secondary structure																				T	T																			T	T		G	G	G	S	G	G	G											T	S	S	B	S	S										T	T
Template Predicted Secondary structure
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	R	S	I	G	N	L	T	A	K	K	M	M	D	R	A	I	E	L	A	A	D	H	G	I	G	L	V	A	L	R	N	A	N	H	W	M	R	G	G	S	Y	G	W	Q	A	A	E	K	G	Y	I	G	I	C	W	T	N	S	I	A	V	M	P	P	W	G	A	K	E	C	R	I	G	T	N	P	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	D	E	G	L	G	Q	V	V	G	Y	R	S	X	K	L	A	I	K	K	A	K	D	T	G	I	G	I	V	I	A	R	N	S	N	H	Y	G	I	A	G	Y	Y	A	L	X	A	A	E	E	G	X	I	G	I	S	X	T	N	S	R	P	L	V	A	P	T	G	G	I	E	R	I	L	G	T	N	P	I	A
Template Known Secondary structure			T	T	B																					S													S		T									T	T	T	S									S	S		B			T	T			S			B
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		161	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.								.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure									.																																																								.	.	.	.	.	.	.
Query SS confidence									.																																																								.	.	.	.	.	.	.
Query Sequence		V	A	I	P	S	T	P	.	I	T	M	V	D	M	S	M	S	M	F	S	Y	G	M	L	E	V	N	R	L	A	G	R	Q	L	P	V	D	G	G	F	D	D	E	G	N	L	T	K	E	P	G	V	I	E	K	N	R	R	I	L	P	M	G	.	.	.	.	.	.	.	Y	W	K	G	S	G	M	S	I	V
Query Conservation									.																																																								.	.	.	.	.	.	.
Alig confidence									.																	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	A	P	T	K	D	K	P	F	L	L	D	X	A	T	S	V	V	P	I	G	K	L	.	.	.	.	.	.	.	.	.	.	.	.	E	W	A	I	N	R	E	G	N	I	T	T	K	V	E	E	V	F	N	G	G	A	L	L	P	L	G	G	F	G	E	L	L	G	G	H	K	G	Y	G	L	S	L	X
Template Known Secondary structure							S	S	S								S	B	S	S		T	T	T		.	.	.	.	.	.	.	.	.	.	.	.								S	S	S				S	S	T	T	T	T	T			B		B	T	T		S	S	S	T	T	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.													.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	M	I	A	T	L	L	S	D	G	A	S	V	A	E	V	T	Q	D	N	S	D	E	Y	G	I	S	Q	I	F	I	A	I	E	V	D	K	L	I	D	G	P	T	R	D	A	K	L	Q	R	I	M	D	Y	V	T	S	A	E	R	A	D	E	N	Q	A	I	R	L	P	G	H	E	F	T	T	L	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	I	L	S	G	I	L	S	G	G	T	W	S	K	Y	V	K	N	T	S	E	K	G	S	N	V	C	H	F	F	X	V	I	D	I	E	H	F	I	P	L	E	E	F	K	E	K	I	S	Q	X	I	E	E	I	K	S	S	R	K	H	P	E	F	E	R	I	W	I	H	G	E	K	G	F	L	T	X	E
Template Known Secondary structure							T	T	T	T	T	S			G	G	G				T	T	S	T	T												G	G	G	T	S																		T	S				T	T		S					T	T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	R	R	N	G	I	T	V	D	D	S	V	W	A	K	I	Q	A	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	R	L	K	L	G	I	P	I	Y	R	K	V	L	E	E	L	N	E	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions