 |
Job Description | P33352 | Confidence | 25.22% | Date | Thu Jan 5 11:51:53 GMT 2012 |
Rank | 86 | Aligned Residues | 94 |
% Identity | 20% | Template | d1q6za3 |
SCOP info | Thiamin diphosphate-binding fold (THDP-binding)
| Thiamin diphosphate-binding fold (THDP-binding)
| Pyruvate oxidase and decarboxylase PP module
|
Resolution | 1.00 |
|
 |
  |   |
280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 340 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | T | N | I | A | S | A | V | E | Y | G | R | Q | L | I | E | Q | P | A | K | S | V | I | I | L | V | S | D | F | Y | E | G | G | S | S | S | L | L | T | H | Q | V | K | K | C | V | Q | S | G | I | K | V | L | G | L | A | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | L | D | S | T | A | T | P | C |
Query Conservation |   |
|
|   |
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|
|   |   |
|   |
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|   |
|   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|   |   |
|   |
|   |
|
|
| . | . | . |   |   |   |   |   |
|
|   |
|   |
|
|
|
|
|   |   |   |   |   |   |
|   |   |   |   |   |   | . | . |   |   |   |   |   |   |
|
|   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
G | F | A | L | P | A | A | I | G | V | Q | L | A | . |
. |
. |
E | P | E | R | Q | V | I | A | V | I | G | D | G | S | A | N | Y | S | I | S | A | L | W | T | A | A | Q | Y | . |
. |
N | I | P | T | I | F | V | I | M | N | N | G | T | Y | G | A | L | R | W | F | A | G | V | L | E | A | E | N | V | P | G | L | D | V |
Template Known Secondary structure |   |
T | S |  |  |  |  |  |  |  |  |  |  |  | . | . | . |
| T | T | S |
|  |  |  |  |  |  |  |  |  |  | T | T | T | G | G | G |  |  |  |  |  |  |  | . | . | T |
|
|
|  |  |  |  |  |  |
| S | B |
|  |  |  |  |  |  |  |  |  |  | T |
|
| S |
|
| S |
| B |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . |
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
404 | . | . | . | . | . | 410 | . | . | . | . | . | . | |
|
|
. | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | |
|
. | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . |
  |
  |   |
345 | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | |
. | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
| . |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Y | D | R | D | T | A | Q | A | L | V | N | V | G | A | Q | I | A | A | M | . |
T | P | G | E | L | A | S | W | L | A | E | N | L | Q | S |
Query Conservation |   |
  |   |   |   |   |
|   |   |
|
|   |   |
|   |   |
|   |
|   | . |   |
|   |   |
|
|   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |
|   |
|   |
|   |   |   |   |   |
|   |   |   |   |
|
|   |   |
|
|   |   |
|   |   |   |
Template Sequence |   |
P | G | I | D | F | R | A | L | A | K | G | Y | G | V | Q | A | L | K | A | D | N | L | E | Q | L | K | G | S | L | Q | E | A | L | S | A |
Template Known Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  | T |
|  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
479 | 480 | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|