Job Description P33352 Confidence 97.76% Date Thu Jan 5 11:51:53 GMT 2012 Rank 37 Aligned Residues 144 % Identity 19% Template c3k6sB_ PDB info PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-2; PDBTitle: structure of integrin alphaxbeta2 ectodomain Resolution 3.50 Å

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		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.						.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	W	Q	L	V	L	L	V	D	Q	S	G	S	M	V	D	S	V	.	.	.	.	.	I	H	S	A	V	M	A	A	C	L	W	Q	L	P	G	I	R	T	H	L	V	A	F	D	T	S	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	I	D	L	Y	Y	L	M	D	L	S	Y	S	M	L	D	D	L	R	N	V	K	K	L	G	G	D	L	L	R	A	L	N	E	I	T	E	S	G	R	I	G	F	G	S	F	V	D	K	T	V	L	P	F	V	N	T	H	P	D	K	L	R	N	P	C	P	N	K	E	K	E	C	Q	P	P	F	A	F	R
Template Known Secondary structure												S	S	T	T						T	T	T	T			T	T							S	S			S												S	S	T	T	S	S			S	S	T	T	T	T					S										S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
				259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.									.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure		.	.																																						.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																						.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	V	D	L	T	A	D	V	A	D	P	V	E	L	L	M	K	V	Q	L	G	G	G	T	N	I	A	S	A	V	E	Y	G	R	Q	L	I	E	.	.	.	.	.	.	.	.	Q	P	A	K	S	V	I	I	L	V	S	D	F	Y	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.																																						.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																						.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	V	L	K	L	T	N	N	S	N	Q	F	Q	T	E	V	G	K	Q	L	I	S	G	N	L	D	A	P	E	G	G	L	D	A	M	M	Q	V	A	A	C	P	E	E	I	G	W	R	N	V	T	R	L	L	V	F	A	T	D	D	G	F	H	F	A	G	D	G	K	L	G	A	I	L	T	P	N	D	G	R
Template Known Secondary structure								S		S									T	S						S	S	S	S											T	T									S	S									S	S					T	T	G	G	G	G	G	T							S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
														311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.			.	.	.	360	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.																																															.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.																																															.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	G	G	S	S	S	L	L	T	H	Q	V	K	K	C	V	Q	S	G	I	K	V	L	G	L	A	A	L	D	S	T	A	T	P	C	Y	D	R	D	T	A	Q	A	L	V	N	V	.	.	G	A	Q	I	A	A	M	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.																																															.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.																		.	.
Template Conservation																																				.	.	.	.	.	.	.
Template Sequence		C	H	L	E	D	N	L	Y	K	R	S	N	E	F	D	Y	P	S	V	G	Q	L	A	H	K	L	A	E	N	N	I	Q	P	I	.	.	.	.	.	.	.	F	A	V	T	S	R	M	V	K	T	Y	E	K	L	T	E	I	I	P	K	S	A	V	G	E	L	S
Template Known Secondary structure					S	S	S	B		S	S	G	G	G	S					G	G	G								T	T		B			.	.	.	.	.	.	.					G	G	G											S	S	S
Template Predicted Secondary structure																																				.	.	.	.	.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.								.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions