Job Description P33352 Confidence 97.58% Date Thu Jan 5 11:51:53 GMT 2012 Rank 39 Aligned Residues 156 % Identity 17% Template c3eh2B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24c; PDBTitle: crystal structure of the human copii-coat protein sec24c Resolution 2.35 Å

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		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.												.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	R	F	N	S	R	I	K	R	Q	S	E	Q	W	Q	L	V	L	L	V	D	Q	S	G	S	M	V	D	S	V	I	H	S	A	V	M	A	A	C	L	W	Q	L	.	.	.	.	.	.	.	.	.	.	.	P	G	I	R	T	H	L	V	A	F	D	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	V	D	Y	C	K	N	N	K	F	P	S	P	P	A	F	I	F	M	I	D	V	S	Y	N	A	I	R	T	G	L	V	R	L	L	C	E	E	L	K	S	L	L	D	F	L	P	R	E	G	G	A	E	E	S	A	I	R	V	G	F	V	T	Y	N	K	V	L	H	F	Y	N	Q	M	M	V	V	S	D	V
Template Known Secondary structure			G	G	G	S	G	G	G															S					T	T	T													G	G	G					T	T		S	S											S	S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
													258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.							.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.																						.															.								.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.																						.															.								.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	V	V	D	L	T	A	D	V	A	D	P	V	E	L	L	M	K	V	.	.	.	.	.	.	Q	L	G	G	G	T	N	I	A	S	A	V	E	Y	G	R	Q	L	I	E	Q	.	P	A	K	S	V	I	I	L	V	S	D	F	Y	E	.	G	G	S	S	S	L	L	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.																						.															.								.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.																						.															.								.
Template Conservation
Template Sequence		A	D	M	F	V	P	L	L	D	G	F	L	V	N	V	N	E	S	R	A	V	I	T	S	L	L	D	Q	I	P	E	M	F	A	D	T	R	E	T	E	T	V	F	V	P	V	I	Q	A	G	M	E	A	L	K	A	A	E	C	A	G	K	L	F	L	F	H	T	S	L	P	I	A	E	A	P	G	K	L	K
Template Known Secondary structure		S	S							S	S	S	S	B		T	T	T	S																T	T								S															T											S				S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
																										318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	H	Q	V	K	K	C	V	Q	S	G	I	K	V	L	G	L	A	A	L	D	S	T	A	T	P	C	Y	D	R	D	T	A	Q	A	L	V	N	V	.	G	A	Q	I	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.																		.
Template Conservation																																												.	.	.	.
Template Sequence		N	R	D	D	R	K	L	I	N	T	D	K	E	K	T	L	F	Q	P	Q	T	G	A	Y	Q	T	L	A	K	E	C	V	A	Q	G	C	C	V	D	L	F	L	.	.	.	.	F	P	N	Q	Y	V	D	V	A	T	L	S	V	V	P	Q	L	T	G	G	S	V	Y
Template Known Secondary structure						T	T	S	T	T	S	T	T	S					S		S	S	T													T								.	.	.	.			S	S								T						T	T
Template Predicted Secondary structure																																												.	.	.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.					.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions