Job Description P33352 Confidence 97.54% Date Thu Jan 5 11:51:53 GMT 2012 Rank 40 Aligned Residues 148 % Identity 18% Template c3egxB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:protein transport protein sec24a; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23a/24a complexed with the snare protein sec22b and3 bound to the transport signal sequence of the snare protein4 bet1 Resolution 3.30 Å

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		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.							.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	R	Q	S	E	Q	W	Q	L	V	L	L	V	D	Q	S	G	S	M	V	D	S	V	I	H	S	A	V	M	A	A	C	L	W	Q	L	P	G	.	.	.	.	.	.	I	R	T	H	L	V	A	F	D	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																								.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	R	P	P	Q	P	P	V	Y	L	F	V	F	D	V	S	H	N	A	V	E	T	G	Y	L	N	S	V	C	Q	S	L	L	D	N	L	D	L	L	P	G	N	T	R	T	K	I	G	F	I	T	F	D	S	T	I	H	F	Y	G	L	Q	E	S	L	S	Q	P	Q	M	L	I	V	S	D	I	E	D	V	F
Template Known Secondary structure		S	S	S													S							T												T	S	T	T	S	S			S										S	S	S								T	T	S	S	S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		498	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
									258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.							.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.																			.	.	.	.	.	.																																											.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																			.	.	.	.	.	.																																											.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	V	V	D	L	T	A	D	V	A	D	P	V	E	L	L	M	K	V	.	.	.	.	.	.	Q	L	G	G	G	T	N	I	A	S	A	V	E	Y	G	R	Q	L	I	E	Q	P	A	K	S	V	I	I	L	V	S	D	F	Y	E	G	G	S	S	S	L	L	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.																			.	.	.	.	.	.																																											.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																			.	.	.	.	.	.																					.																						.	.	.	.	.	.	.
Template Conservation																																																					.
Template Sequence		I	P	M	P	E	N	L	L	V	N	L	N	E	S	K	E	L	V	Q	D	L	L	K	T	L	P	Q	M	F	T	K	T	L	E	T	Q	S	A	L	G	P	A	L	Q	A	A	F	K	L	M	S	.	P	T	G	G	R	M	S	V	F	Q	T	Q	L	P	T	L	G	V	G	A	L	K	P	R	E	E	P	N
Template Known Secondary structure			S		S	S	S	S																		G	G	G	T	T	T	T																				T	.	T	T										S				S	S	T	T
Template Predicted Secondary structure																																																					.
Template SS confidence
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.		.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.
																318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	H	Q	V	K	K	C	V	Q	S	G	I	K	V	L	G	L	A	A	L	D	S	T	A	T	P	C	Y	D	R	D	T	A	Q	A	L	V	N	V	.	G	A	Q	I	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.																		.
Template Conservation																																		.	.	.	.
Template Sequence		H	R	S	S	A	K	M	T	P	S	T	D	F	Y	K	K	L	A	L	D	C	S	G	Q	Q	V	A	V	D	L	F	L	.	.	.	.	L	S	G	Q	Y	S	D	L	A	S	L	G	C	I	S	R	Y	S	A	G	S	V	Y
Template Known Secondary structure		S	S	S							S		S											T	T	T								.	.	.	.			S	S								T					T	T	T
Template Predicted Secondary structure																																		.	.	.	.
Template SS confidence
		657	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.					.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions