Job Description P33352 Confidence 97.31% Date Thu Jan 5 11:51:53 GMT 2012 Rank 43 Aligned Residues 156 % Identity 16% Template c3eg9B_ PDB info PDB header:protein transport Chain: B: PDB Molecule:sec24 related gene family, member d; PDBTitle: crystal structure of the mammalian copii-coat protein2 sec23/24 bound to the transport signal sequence of membrin Resolution 3.00 Å

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		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.												.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	R	F	N	S	R	I	K	R	Q	S	E	Q	W	Q	L	V	L	L	V	D	Q	S	G	S	M	V	D	S	V	I	H	S	A	V	M	A	A	C	L	W	Q	L	.	.	.	.	.	.	.	.	.	.	.	P	G	I	R	T	H	L	V	A	F	D	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	D	Y	C	R	K	S	K	P	P	N	P	P	A	F	I	F	M	I	D	V	S	Y	S	N	I	K	N	G	L	V	K	L	I	C	E	E	L	K	T	M	L	E	K	I	P	K	E	E	Q	E	E	T	S	A	I	R	V	G	F	I	T	Y	N	K	V	L	H	F	F	N	V	K	S	N	L	A	Q	P
Template Known Secondary structure			G	G	G	S	G	G	G	S														S						T	T													G	G	G					T	T	S	S	S											S	S	S								T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
																					258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.							.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.		.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.																						.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.																						.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	V	D	L	T	A	D	V	A	D	P	V	E	L	L	M	K	V	.	.	.	.	.	.	Q	L	G	G	G	T	N	I	A	S	A	V	E	Y	G	R	Q	L	I	E	Q	.	P	A	K	S	V	I	I	L	V	S	D	F	Y	E	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.																						.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.																						.
Template Conservation
Template Sequence		Q	M	M	V	V	T	D	V	G	E	V	F	V	P	L	L	D	G	F	L	V	N	Y	Q	E	S	Q	S	V	I	H	N	L	L	D	Q	I	P	D	M	F	A	D	S	N	E	N	E	T	V	F	A	P	V	I	Q	A	G	M	E	A	L	K	A	A	D	C	P	G	K	L	F	I	F	H	S	S	L	P	T
Template Known Secondary structure									T	T	S						S	S	S	S	S	B		T	T	T	T															T	T	T																							T	S										S
Template Predicted Secondary structure
Template SS confidence
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
		312		.	.	.	.	.																										.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.
Predicted Secondary structure			.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Query SS confidence			.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Query Sequence		G	.	S	S	S	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	H	Q	V	K	K	C	V	Q	S	G	I	K	V	L	G	L	A	A	L	D	S	T	A	T	P	C	Y	D	R	D	T	A	Q	A	L	V	N	V	.	G	A	Q	I	A
Query Conservation			.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.
Alig confidence			.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.																		.
Template Conservation																																																				.	.	.	.
Template Sequence		A	E	A	P	G	K	L	K	N	R	D	D	K	K	L	V	N	T	D	K	E	K	I	L	F	Q	P	Q	T	N	V	Y	D	S	L	A	K	D	C	V	A	H	G	C	S	V	T	L	F	L	.	.	.	.	F	P	S	Q	Y	V	D	V	A	S	L	G	L	V	P	Q	L	T	G	G	T	L	Y
Template Known Secondary structure		S	S	S	T	T											S	S		S		G	G	G	G	G	S		S	S	S												T	T								.	.	.	.			S	S								T						T	T
Template Predicted Secondary structure																																																				.	.	.	.
Template SS confidence
		588	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.					.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions